Churc1 churchill domain containing 1 [Rattus norvegicus (Norway rat)] - Gene

Summary

Official Symbol: Churc1provided by RGD
Official Full Name: churchill domain containing 1provided by RGD
Primary source: RGD:1305116
See related: EnsemblRapid:ENSRNOG00000007660 AllianceGenome:RGD:1305116
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary: Predicted to enable protein farnesyltransferase activity and zinc ion binding activity. Predicted to be involved in positive regulation of DNA-templated transcription and prenylation. Predicted to be part of microtubule associated complex and protein farnesyltransferase complex. Orthologous to human CHURC1 (churchill domain containing 1). [provided by Alliance of Genome Resources, Dec 2024]
Expression: Biased expression in Kidney (RPKM 469.6), Heart (RPKM 421.8) and 9 other tissues See more
Orthologs: human mouse all
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Genomic context

Location:: 6q24

Exon count:: 4

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	6	NC_086024.1 (101203778..101218364)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	6	NC_051341.1 (95464488..95485208)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	6	NC_005105.4 (99817439..99831574)

Chromosome 6 - NC_086024.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by RGD

Function	Evidence Code	Pubs
enables protein farnesyltransferase activity	IEA Inferred from Electronic Annotation more info
enables zinc ion binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
involved_in positive regulation of DNA-templated transcription	IEA Inferred from Electronic Annotation more info
involved_in prenylation	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
part_of microtubule associated complex	IEA Inferred from Electronic Annotation more info
part_of protein farnesyltransferase complex	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: protein Churchill

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.