U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Znf780b zinc finger protein 780B [ Rattus norvegicus (Norway rat) ]

    Gene ID: 100910046, updated on 9-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    Znf780bprovided by RGD
    Official Full Name
    zinc finger protein 780Bprovided by RGD
    Primary source
    RGD:6500398
    See related
    EnsemblRapid:ENSRNOG00000079029 AllianceGenome:RGD:6500398
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to enable metal ion binding activity. Predicted to be involved in regulation of DNA-templated transcription. Predicted to be located in nucleus. Orthologous to human ZNF780A (zinc finger protein 780A) and ZNF780B (zinc finger protein 780B). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Brain (RPKM 85.6), Thymus (RPKM 67.5) and 9 other tissues See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See Znf780b in Genome Data Viewer
    Location:
    1q21
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (92136761..92159076)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (83009174..83030463)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (84576059..84656464)

    Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134483015 Neighboring gene protein NYNRIN-like Neighboring gene U6 spliceosomal RNA Neighboring gene transfer RNA serine (anticodon AGA) 27 Neighboring gene cold shock domain containing E1, pseudogene 2 Neighboring gene ribosomal protein L28 like 4

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    uncharacterized protein LOC100910046; zinc finger protein 60
    Names
    zinc finger protein 60-like

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001432743.1 → NP_001419672.1  uncharacterized protein LOC100910046 isoform a

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000001
      UniProtKB/TrEMBL
      M0R7D4

    2. NM_001432744.1 → NP_001419673.1  uncharacterized protein LOC100910046 isoform a

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000001
      UniProtKB/TrEMBL
      M0R7D4

    3. NM_001432745.1 → NP_001419674.1  uncharacterized protein LOC100910046 isoform b

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000001
      UniProtKB/TrEMBL
      A0A8I6ARQ8

    4. NM_001432746.1 → NP_001419675.1  uncharacterized protein LOC100910046 isoform b

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000001
      UniProtKB/TrEMBL
      A0A8I6ARQ8

    RNA

    1. NR_197306.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000001

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086019.1 Reference GRCr8

      Range
      92136761..92159076
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039100839.2 → XP_038956767.1  zinc finger protein 60 isoform X1

      Related
      ENSRNOP00000065360.4, ENSRNOT00000073966.4
      Conserved Domains (3) summary
      smart00349
      Location:14 → 75
      KRAB; krueppel associated box
      COG5048
      Location:248 → 653
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:503 → 523
      ZF_C2H2; C2H2 Zn finger [structural motif]

    2. XM_039100840.2 → XP_038956768.1  zinc finger protein 60 isoform X1

      Conserved Domains (3) summary
      smart00349
      Location:14 → 75
      KRAB; krueppel associated box
      COG5048
      Location:248 → 653
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:503 → 523
      ZF_C2H2; C2H2 Zn finger [structural motif]

    3. XM_039100841.2 → XP_038956769.1  zinc finger protein 60 isoform X2

      Conserved Domains (2) summary
      COG5048
      Location:174 → 579
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:429 → 449
      ZF_C2H2; C2H2 Zn finger [structural motif]
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.