U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Pex11g peroxisomal biogenesis factor 11 gamma [ Rattus norvegicus (Norway rat) ]

    Gene ID: 288369, updated on 9-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    Pex11gprovided by RGD
    Official Full Name
    peroxisomal biogenesis factor 11 gammaprovided by RGD
    Primary source
    RGD:1307070
    See related
    EnsemblRapid:ENSRNOG00000028100 AllianceGenome:RGD:1307070
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Pex11c
    Summary
    Predicted to be involved in peroxisome fission and regulation of peroxisome size. Predicted to be located in peroxisome. Predicted to be part of protein-containing complex. Predicted to be active in peroxisomal membrane. Orthologous to human PEX11G (peroxisomal biogenesis factor 11 gamma). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Adrenal (RPKM 48.5), Kidney (RPKM 37.7) and 9 other tissues See more
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See Pex11g in Genome Data Viewer
    Location:
    12p12
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 12 NC_086030.1 (6301461..6329741, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 12 NC_051347.1 (1502606..1532347, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 12 NC_005111.4 (2000426..2007516, complement)

    Chromosome 12 - NC_086030.1Genomic Context describing neighboring genes Neighboring gene insulin receptor Neighboring gene uncharacterized LOC134481144 Neighboring gene Rho/Rac guanine nucleotide exchange factor 18 Neighboring gene uncharacterized LOC120095867 Neighboring gene stabilizer of axonemal microtubules 5 Neighboring gene uncharacterized LOC120095868 Neighboring gene zinc finger protein 358 Neighboring gene mucolipin TRP cation channel 1

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. cDNA cloning and characterization of the third isoform of human peroxin Pex11p. Tanaka A, et al. Biochem Biophys Res Commun, 2003 Jan 24. PMID 12559946
    2. PEX11 family members are membrane elongation factors that coordinate peroxisome proliferation and maintenance. Koch J, et al. J Cell Sci, 2010 Oct 1. PMID 20826455
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RGD

    Process Evidence Code Pubs
    involved_in peroxisome fission IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in peroxisome fission ISO
    Inferred from Sequence Orthology
    more info
    		  
    involved_in regulation of peroxisome size ISO
    Inferred from Sequence Orthology
    more info
    		  
    Component Evidence Code Pubs
    is_active_in peroxisomal membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in peroxisomal membrane ISO
    Inferred from Sequence Orthology
    more info
    		  
    located_in peroxisome ISO
    Inferred from Sequence Orthology
    more info
    		  
    part_of protein-containing complex ISO
    Inferred from Sequence Orthology
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    peroxisomal membrane protein 11C
    Names
    peroxisomal biogenesis factor 11c

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001105902.1 → NP_001099372.1  peroxisomal membrane protein 11C

      See identical proteins and their annotated locations for NP_001099372.1

      Status: PROVISIONAL

      Source sequence(s)
      CH474084
      UniProtKB/TrEMBL
      A0A8I6A7E4, A6KQ03
      Conserved Domains (1) summary
      pfam05648
      Location:4 → 229
      PEX11; Peroxisomal biogenesis factor 11 (PEX11)

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086030.1 Reference GRCr8

      Range
      6301461..6329741 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039089141.2 → XP_038945069.1  peroxisomal membrane protein 11C isoform X5

      UniProtKB/TrEMBL
      A0A8I6A7E4
      Conserved Domains (1) summary
      pfam05648
      Location:4 → 213
      PEX11; Peroxisomal biogenesis factor 11 (PEX11)

    2. XM_039089139.2 → XP_038945067.1  peroxisomal membrane protein 11C isoform X1

      UniProtKB/TrEMBL
      A0A8I6A7E4
      Conserved Domains (1) summary
      pfam05648
      Location:7 → 215
      PEX11; Peroxisomal biogenesis factor 11 (PEX11)

    3. XM_039089140.2 → XP_038945068.1  peroxisomal membrane protein 11C isoform X2

      UniProtKB/TrEMBL
      A0A8I6A7E4
      Related
      ENSRNOP00000105952.1, ENSRNOT00000161162.1
      Conserved Domains (1) summary
      pfam05648
      Location:2 → 210
      PEX11; Peroxisomal biogenesis factor 11 (PEX11)

    4. XM_063271107.1 → XP_063127177.1  peroxisomal membrane protein 11C isoform X4

    5. XM_063271106.1 → XP_063127176.1  peroxisomal membrane protein 11C isoform X3

    RNA

    1. XR_005491601.2 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.