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    Vstm2b V-set and transmembrane domain containing 2B [ Rattus norvegicus (Norway rat) ]

    Gene ID: 361560, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Vstm2bprovided by RGD
    Official Full Name
    V-set and transmembrane domain containing 2Bprovided by RGD
    Primary source
    RGD:1306235
    See related
    EnsemblRapid:ENSRNOG00000017456 AllianceGenome:RGD:1306235
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1306235
    Summary
    Predicted to be active in membrane. Orthologous to human VSTM2B (V-set and transmembrane domain containing 2B). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Restricted expression toward (RPKM 43.1) See more
    Orthologs
    human mouse all
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    Genomic context

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    See Vstm2b in Genome Data Viewer
    Location:
    1q22
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (101728708..101757122)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (92592070..92620491)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (97632473..97660962)

    Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene transfer RNA proline (anticodon CGG) Neighboring gene uncharacterized LOC108349455 Neighboring gene RIKEN cDNA 4930433I11 gene like Neighboring gene eukaryotic translation termination factor 1, pseudogene 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    is_active_in membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    V-set and transmembrane domain-containing protein 2B

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001108479.2 → NP_001101949.1  V-set and transmembrane domain-containing protein 2B precursor

      See identical proteins and their annotated locations for NP_001101949.1

      Status: PROVISIONAL

      Source sequence(s)
      JAXUCZ010000001
      UniProtKB/TrEMBL
      A6JAF9, D4A3Q0
      Related
      ENSRNOP00000023672.5, ENSRNOT00000023671.8
      Conserved Domains (2) summary
      smart00410
      Location:34 → 148
      IG_like; Immunoglobulin like
      pfam07686
      Location:32 → 149
      V-set; Immunoglobulin V-set domain

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086019.1 Reference GRCr8

      Range
      101728708..101757122
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039082094.2 → XP_038938022.1  V-set and transmembrane domain-containing protein 2B isoform X1

      Conserved Domains (1) summary
      smart00409
      Location:10 → 59
      IG; Immunoglobulin

    RNA

    1. XR_005487917.2 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.