U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Hhipl1 HHIP-like 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 362781, updated on 9-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    Hhipl1provided by RGD
    Official Full Name
    HHIP-like 1provided by RGD
    Primary source
    RGD:1311698
    See related
    EnsemblRapid:ENSRNOG00000028390 AllianceGenome:RGD:1311698
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1311698
    Summary
    Predicted to be located in extracellular region and membrane. Orthologous to human HHIPL1 (HHIP like 1). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Brain (RPKM 23.8), Adrenal (RPKM 17.8) and 9 other tissues See more
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See Hhipl1 in Genome Data Viewer
    Location:
    6q32
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 6 NC_086024.1 (132984028..133008248)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 6 NC_051341.1 (127219616..127243839)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 6 NC_005105.4 (132218583..132242852)

    Chromosome 6 - NC_086024.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120103617 Neighboring gene coiled-coil domain containing 85C Neighboring gene uncharacterized LOC120103618 Neighboring gene cytochrome P450, family 46, subfamily a, polypeptide 1 Neighboring gene uncharacterized LOC120103619 Neighboring gene EMAP like 1

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

    Go to the top of the pageHelp

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    located_in extracellular region IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    HHIP-like protein 1
    Names
    hedgehog interacting protein-like 1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001432093.1 → NP_001419022.1  HHIP-like protein 1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000006
      UniProtKB/TrEMBL
      A6KBF8, D4A9N1

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086024.1 Reference GRCr8

      Range
      132984028..133008248
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_343107.10 → XP_343108.4  HHIP-like protein 1 isoform X1

      Related
      ENSRNOP00000038254.4, ENSRNOT00000034883.7
      Conserved Domains (4) summary
      smart00202
      Location:682 → 785
      SR; Scavenger receptor Cys-rich
      PHA03378
      Location:581 → 704
      PHA03378; EBNA-3B; Provisional
      pfam03024
      Location:42 → 189
      Folate_rec; Folate receptor family
      cl26817
      Location:199 → 445
      GSDH; Glucose / Sorbosone dehydrogenase

    2. XM_063262802.1 → XP_063118872.1  HHIP-like protein 1 isoform X3

    3. XM_039113375.2 → XP_038969303.1  HHIP-like protein 1 isoform X4

      Conserved Domains (3) summary
      smart00202
      Location:342 → 445
      SR; Scavenger receptor Cys-rich
      PHA03378
      Location:241 → 364
      PHA03378; EBNA-3B; Provisional
      cl26817
      Location:3 → 105
      GSDH; Glucose / Sorbosone dehydrogenase

    4. XM_039113374.2 → XP_038969302.1  HHIP-like protein 1 isoform X2

      Conserved Domains (3) summary
      smart00202
      Location:408 → 511
      SR; Scavenger receptor Cys-rich
      PHA03378
      Location:307 → 430
      PHA03378; EBNA-3B; Provisional
      cl26817
      Location:28 → 171
      GSDH; Glucose / Sorbosone dehydrogenase
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Chemical Information
    Molecular Biology Databases
    Research Materials
    Tools