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    C13h1orf74 similar to human chromosome 1 open reading frame 74 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 100125367, updated on 9-Dec-2024

    Summary

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    Official Symbol
    C13h1orf74provided by RGD
    Official Full Name
    similar to human chromosome 1 open reading frame 74provided by RGD
    Primary source
    RGD:1642423
    See related
    EnsemblRapid:ENSRNOG00000005558 AllianceGenome:RGD:1642423
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    C1orf74
    Summary
    Orthologous to human C1orf74 (chromosome 1 open reading frame 74). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Thymus (RPKM 78.8), Muscle (RPKM 65.3) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See C13h1orf74 in Genome Data Viewer
    Location:
    13q27
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 13 NC_086031.1 (107221285..107224063)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 13 NC_051348.1 (104692769..104695368)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 13 NC_005112.4 (111890825..111893308)

    Chromosome 13 - NC_086031.1Genomic Context describing neighboring genes Neighboring gene UTP25 small subunit processome component Neighboring gene uncharacterized LOC120096360 Neighboring gene interferon regulatory factor 6 Neighboring gene TRAF3 interacting protein 3 Neighboring gene small nucleolar RNA SNORA48 Neighboring gene hydroxysteroid 11-beta dehydrogenase 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Gene and alternative splicing annotation with AIR. Florea L, et al. Genome Res, 2005 Jan. PMID 15632090, Free PMC Article
    2. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Clone Names

    • MGC94716

    General protein information

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    Preferred Names
    UPF0739 protein C1orf74 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001103357.1 → NP_001096827.1  UPF0739 protein C1orf74 homolog

      See identical proteins and their annotated locations for NP_001096827.1

      Status: PROVISIONAL

      Source sequence(s)
      BC085897
      UniProtKB/Swiss-Prot
      Q5U2R2
      UniProtKB/TrEMBL
      A6JH22
      Conserved Domains (1) summary
      pfam14953
      Location:15 → 263
      DUF4504; Domain of unknown function (DUF4504)

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086031.1 Reference GRCr8

      Range
      107221285..107224063
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039090217.2 → XP_038946145.1  UPF0739 protein C1orf74 homolog isoform X1

      UniProtKB/Swiss-Prot
      Q5U2R2
      UniProtKB/TrEMBL
      A6JH22
      Related
      ENSRNOP00000076619.1, ENSRNOT00000108080.2
      Conserved Domains (1) summary
      pfam14953
      Location:15 → 263
      DUF4504; Domain of unknown function (DUF4504)

    2. XM_017598635.3 → XP_017454124.1  UPF0739 protein C1orf74 homolog isoform X1

      UniProtKB/Swiss-Prot
      Q5U2R2
      UniProtKB/TrEMBL
      A6JH22
      Related
      ENSRNOP00000054032.1, ENSRNOT00000007341.5
      Conserved Domains (1) summary
      pfam14953
      Location:15 → 263
      DUF4504; Domain of unknown function (DUF4504)
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q5U2R2.1 GenPept UniProtKB/Swiss-Prot:Q5U2R2

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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