Xlr5c X-linked lymphocyte-regulated 5C [Rattus norvegicus (Norway rat)] - Gene

Summary

Official Symbol: Xlr5cprovided by RGD
Official Full Name: X-linked lymphocyte-regulated 5Cprovided by RGD
Primary source: RGD:6495748
See related: EnsemblRapid:ENSRNOG00000050177 AllianceGenome:RGD:6495748
Gene type: protein coding
RefSeq status: PREDICTED
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary: Orthologous to human FAM9A (family with sequence similarity 9 member A). [provided by Alliance of Genome Resources, Dec 2024]
Expression: Restricted expression toward (RPKM 73.2) See more
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Genomic context

Location:: Xq37

Exon count:: 11

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	X	NC_086039.1 (156141979..156159302, complement)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	X	NC_051356.1 (150990742..151008064, complement)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	1	NC_005100.4 (146972526..146989856)

Chromosome X - NC_086039.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Xlr5c-like is involved in regulating the expression of specific ovulatory genes such as Snap25, Cxcr4, and Adamts1, possibly acting in the nucleus of periovulatory granulosa cells.
Title: X-linked lymphocyte regulated gene 5c-like (Xlr5c-like) is a novel target of progesterone action in granulosa cells of periovulatory rat ovaries.

Submit: New GeneRIF Correction

General gene information

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General protein information

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Preferred Names: uncharacterized protein LOC100911002

Names: X-linked lymphocyte-regulated protein 3A-like; X-linked lymphocyte-regulated protein 5C-like; synaptonemal complex protein 3-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001414853.1 → NP_001401782.1 uncharacterized protein LOC100911002

Status: PREDICTED

Source sequence(s)

JAXUCZ010000021

UniProtKB/TrEMBL

M0R9I7, M0RCW5