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    Pdzph1 PDZ and pleckstrin homology domains 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 501196, updated on 3-Dec-2024

    Summary

    Official Symbol
    Pdzph1provided by RGD
    Official Full Name
    PDZ and pleckstrin homology domains 1provided by RGD
    Primary source
    RGD:1560925
    See related
    EnsemblRapid:ENSRNOG00000011042 AllianceGenome:RGD:1560925
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1560925
    Expression
    Biased expression in Testes (RPKM 9.7), Adrenal (RPKM 5.9) and 4 other tissues See more
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    Genomic context

    See Pdzph1 in Genome Data Viewer
    Location:
    9q36
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 9 NC_086027.1 (106038530..106176711, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 9 NC_051344.1 (98591222..98729409, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 9 NC_005108.4 (105530933..105660227, complement)

    Chromosome 9 - NC_086027.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108351978 Neighboring gene uncharacterized LOC134480423 Neighboring gene nudix hydrolase 12 Neighboring gene uncharacterized LOC108351976

    Genomic regions, transcripts, and products

    General protein information

    Preferred Names
    similar to 2610034M16Rik protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001402237.1NP_001389166.1  similar to 2610034M16Rik protein

      Status: VALIDATED

      Source sequence(s)
      JACYVU010000215
      UniProtKB/TrEMBL
      A6JR89
      Related
      ENSRNOP00000053273.5, ENSRNOT00000056434.5

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086027.1 Reference GRCr8

      Range
      106038530..106176711 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)