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    Nkain2 sodium/potassium transporting ATPase interacting 2 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 102551716, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Nkain2provided by RGD
    Official Full Name
    sodium/potassium transporting ATPase interacting 2provided by RGD
    Primary source
    RGD:7740967
    See related
    EnsemblRapid:ENSRNOG00000029608 AllianceGenome:RGD:7740967
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to be involved in regulation of sodium ion transport. Predicted to be located in plasma membrane. Orthologous to human NKAIN2 (sodium/potassium transporting ATPase interacting 2). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Restricted expression toward (RPKM 139.8) See more
    Orthologs
    human mouse all
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    Genomic context

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    See Nkain2 in Genome Data Viewer
    Location:
    1p11
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (26488381..27696134)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (24668627..25877051)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (27473251..28161521)

    Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene transfer RNA alanine (anticodon AGC) 77 Neighboring gene uncharacterized LOC134484975 Neighboring gene transfer RNA valine (anticodon CAC) 7 Neighboring gene RNA, U6 small nuclear 1001 Neighboring gene small nucleolar RNA SNORA17 Neighboring gene 40S ribosomal protein S27-like Neighboring gene RNA, U4 small nuclear 5 Neighboring gene down-regulator of transcription 1, pseudogene 1 Neighboring gene uncharacterized LOC134484976 Neighboring gene ring finger protein 217

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. A novel family of transmembrane proteins interacting with beta subunits of the Na,K-ATPase. Gorokhova S, et al. Hum Mol Genet, 2007 Oct 15. PMID 17606467
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RGD

    Process Evidence Code Pubs
    involved_in regulation of sodium ion transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    located_in plasma membrane ISO
    Inferred from Sequence Orthology
    more info
    		  

    General protein information

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    Preferred Names
    sodium/potassium transporting ATPase interacting 2; sodium/potassium-transporting ATPase subunit beta-1-interacting protein 2
    Names
    NKAIN2 transcript-like
    Na+/K+ transporting ATPase interacting 2
    sodium/potassium-transporting ATPase subunit beta-1-interacting protein 2-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001432842.1 → NP_001419771.1  sodium/potassium transporting ATPase interacting 2 isoform 1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000001
      UniProtKB/TrEMBL
      F1M3X2

    2. NM_001432843.1 → NP_001419772.1  sodium/potassium transporting ATPase interacting 2 isoform 2

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000001

    RNA

    1. NR_197310.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000001

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086019.1 Reference GRCr8

      Range
      26488381..27696134
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063276515.1 → XP_063132585.1  sodium/potassium-transporting ATPase subunit beta-1-interacting protein 2 isoform X3

    2. XM_063276506.1 → XP_063132576.1  sodium/potassium-transporting ATPase subunit beta-1-interacting protein 2 isoform X2

      Related
      ENSRNOP00000047346.6, ENSRNOT00000047224.7

    3. XM_063276503.1 → XP_063132573.1  sodium/potassium-transporting ATPase subunit beta-1-interacting protein 2 isoform X1

      UniProtKB/TrEMBL
      M0RCY3

    RNA

    1. XR_010058891.1 RNA Sequence

    2. XR_005499794.2 RNA Sequence

      Related
      ENSRNOT00000163891.1
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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