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    Arl6ip6 ARF like GTPase 6 interacting protein 6 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 499798, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Arl6ip6provided by RGD
    Official Full Name
    ARF like GTPase 6 interacting protein 6provided by RGD
    Primary source
    RGD:1564819
    See related
    EnsemblRapid:ENSRNOG00000005074 AllianceGenome:RGD:1564819
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to be located in nuclear inner membrane. Orthologous to human ARL6IP6 (ADP ribosylation factor like GTPase 6 interacting protein 6). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Thymus (RPKM 109.5), Adrenal (RPKM 105.2) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Arl6ip6 in Genome Data Viewer
    Location:
    3q12
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 3 NC_086021.1 (58098978..58126962)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 3 NC_051338.1 (37689994..37720358)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 3 NC_005102.4 (38742072..38768010)

    Chromosome 3 - NC_086021.1Genomic Context describing neighboring genes Neighboring gene formin-like 2 Neighboring gene uncharacterized LOC134486095 Neighboring gene uncharacterized LOC134486096 Neighboring gene pre-mRNA processing factor 40 homolog A Neighboring gene NADH:ubiquinone oxidoreductase subunit B1, pseudogene 2 Neighboring gene U6 spliceosomal RNA

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Identification of new transmembrane proteins concentrated at the nuclear envelope using organellar proteomics of mesenchymal cells. Cheng LC, et al. Nucleus, 2019 Dec. PMID 31142202, Free PMC Article
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    located_in nuclear inner membrane ISO
    Inferred from Sequence Orthology
    more info
    		  
    located_in nuclear inner membrane ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  

    General protein information

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    Preferred Names
    ADP-ribosylation factor-like protein 6-interacting protein 6
    Names
    ADP ribosylation factor like GTPase 6 interacting protein 6
    ADP-ribosylation factor GTPase 6 interacting protein 6
    ADP-ribosylation factor-like 6 interacting protein 6
    ADP-ribosylation-like factor 6-interacting protein 6
    ARL-6-interacting protein 6
    aip-6

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001024310.1 → NP_001019481.1  ADP-ribosylation factor-like protein 6-interacting protein 6

      See identical proteins and their annotated locations for NP_001019481.1

      Status: PROVISIONAL

      Source sequence(s)
      BC079329
      UniProtKB/Swiss-Prot
      Q68FV2
      UniProtKB/TrEMBL
      A6JF34
      Related
      ENSRNOP00000108042.1, ENSRNOT00000147151.1
      Conserved Domains (1) summary
      pfam15062
      Location:135 → 211
      ARL6IP6; Haemopoietic lineage transmembrane helix

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086021.1 Reference GRCr8

      Range
      58098978..58126962
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039105669.2 → XP_038961597.1  ADP-ribosylation factor-like protein 6-interacting protein 6 isoform X1

      Related
      ENSRNOP00000006774.5, ENSRNOT00000006774.8
      Conserved Domains (1) summary
      pfam15062
      Location:135 → 204
      ARL6IP6; Haemopoietic lineage transmembrane helix

    RNA

    1. XR_010064684.1 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q68FV2.1 GenPept UniProtKB/Swiss-Prot:Q68FV2

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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