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    Tsnaxip1 translin-associated factor X interacting protein 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 498944, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Tsnaxip1provided by RGD
    Official Full Name
    translin-associated factor X interacting protein 1provided by RGD
    Primary source
    RGD:1565341
    See related
    EnsemblRapid:ENSRNOG00000018954 AllianceGenome:RGD:1565341
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1565341
    Summary
    Predicted to be active in cytoplasm. Orthologous to human TSNAXIP1 (translin associated factor X interacting protein 1). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Testes (RPKM 69.6), Lung (RPKM 14.7) and 1 other tissue See more
    Orthologs
    human mouse all
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    Genomic context

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    See Tsnaxip1 in Genome Data Viewer
    Location:
    19q12
    Exon count:
    19
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 19 NC_086037.1 (50626846..50647848)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 19 NC_051354.1 (33716834..33734824)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 19 NC_005118.4 (37795432..37813424)

    Chromosome 19 - NC_086037.1Genomic Context describing neighboring genes Neighboring gene Gfo/Idh/MocA-like oxidoreductase domain containing 2 Neighboring gene uncharacterized LOC134483349 Neighboring gene RAN binding protein 10 Neighboring gene uncharacterized LOC108348930 Neighboring gene centromere protein T Neighboring gene THAP domain containing 11 Neighboring gene nuclear transport factor 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Identification and characterization of cDNAs encoding four novel proteins that interact with translin associated factor-X. Bray JD, et al. Genomics, 2002 Jun. PMID 12036294
    2. Characterization of the piRNA complex from rat testes. Lau NC, et al. Science, 2006 Jul 21. PMID 16778019
    3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in cytoplasm ISO
    Inferred from Sequence Orthology
    more info
    		  

    General protein information

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    Preferred Names
    translin-associated factor X-interacting protein 1
    Names
    translin-associated factor X (Tsnax) interacting protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001109130.1 → NP_001102600.1  translin-associated factor X-interacting protein 1

      See identical proteins and their annotated locations for NP_001102600.1

      Status: PROVISIONAL

      Source sequence(s)
      CH473972
      UniProtKB/TrEMBL
      A0A8I5ZYF3, A6IYS4
      Related
      ENSRNOP00000025686.7, ENSRNOT00000025686.7
      Conserved Domains (1) summary
      pfam15739
      Location:101 → 204
      TSNAXIP1_N; Translin-associated factor X-interacting N-terminus

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086037.1 Reference GRCr8

      Range
      50626846..50647848
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017601346.3 → XP_017456835.1  translin-associated factor X-interacting protein 1 isoform X7

    2. XM_006255527.5 → XP_006255589.1  translin-associated factor X-interacting protein 1 isoform X3

      UniProtKB/TrEMBL
      A0A8I5ZYF3
      Related
      ENSRNOP00000112312.1, ENSRNOT00000152533.1
      Conserved Domains (1) summary
      pfam15739
      Location:93 → 196
      TSNAXIP1_N; Translin-associated factor X-interacting N-terminus

    3. XM_006255529.5 → XP_006255591.1  translin-associated factor X-interacting protein 1 isoform X5

      UniProtKB/TrEMBL
      A0A8I5ZYF3
      Conserved Domains (2) summary
      COG1196
      Location:48 → 316
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      pfam15739
      Location:54 → 157
      TSNAXIP1_N; Translin-associated factor X-interacting N-terminus

    4. XM_039097921.2 → XP_038953849.1  translin-associated factor X-interacting protein 1 isoform X1

      Conserved Domains (2) summary
      COG1196
      Location:129 → 397
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      pfam15739
      Location:135 → 238
      TSNAXIP1_N; Translin-associated factor X-interacting N-terminus

    5. XM_063278192.1 → XP_063134262.1  translin-associated factor X-interacting protein 1 isoform X5

      UniProtKB/TrEMBL
      A0A8I5ZYF3

    6. XM_063278193.1 → XP_063134263.1  translin-associated factor X-interacting protein 1 isoform X8

      UniProtKB/TrEMBL
      A0A8I5ZYF3, D3ZU07

    7. XM_039097925.2 → XP_038953853.1  translin-associated factor X-interacting protein 1 isoform X8

      UniProtKB/TrEMBL
      A0A8I5ZYF3, D3ZU07
      Conserved Domains (2) summary
      COG1196
      Location:42 → 310
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      pfam15739
      Location:48 → 151
      TSNAXIP1_N; Translin-associated factor X-interacting N-terminus

    8. XM_039097922.2 → XP_038953850.1  translin-associated factor X-interacting protein 1 isoform X2

      Conserved Domains (2) summary
      COG1196
      Location:110 → 378
      Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
      pfam15739
      Location:116 → 219
      TSNAXIP1_N; Translin-associated factor X-interacting N-terminus

    9. XM_017601344.3 → XP_017456833.1  translin-associated factor X-interacting protein 1 isoform X4

      UniProtKB/TrEMBL
      A0A8I5ZYF3, A0A8I6A9Q1
      Related
      ENSRNOP00000089205.1, ENSRNOT00000116830.2

    10. XM_039097926.2 → XP_038953854.1  translin-associated factor X-interacting protein 1 isoform X9

    11. XM_017601345.3 → XP_017456834.1  translin-associated factor X-interacting protein 1 isoform X6

    Nucleotide Protein Strain
    Heading Accession and Version

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