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    Dicer1 dicer 1 ribonuclease III [ Rattus norvegicus (Norway rat) ]

    Gene ID: 299284, updated on 9-Dec-2024

    Summary

    Official Symbol
    Dicer1provided by RGD
    Official Full Name
    dicer 1 ribonuclease IIIprovided by RGD
    Primary source
    RGD:1309381
    See related
    EnsemblRapid:ENSRNOG00000010711 AllianceGenome:RGD:1309381
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to enable several functions, including double-stranded RNA binding activity; endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters; and regulatory RNA binding activity. Predicted to contribute to pre-miRNA binding activity. Involved in several processes, including positive regulation of cell population proliferation; positive regulation of collagen biosynthetic process; and positive regulation of endothelial cell-matrix adhesion via fibronectin. Located in dendrite; endoplasmic reticulum-Golgi intermediate compartment; and growth cone. Biomarker of middle cerebral artery infarction. Human ortholog(s) of this gene implicated in DICER1 syndrome; gastrointestinal system cancer (multiple); multinodular goiter; nephroma; and pleuropulmonary blastoma. Orthologous to human DICER1 (dicer 1, ribonuclease III). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Lung (RPKM 100.4), Adrenal (RPKM 100.4) and 9 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Dicer1 in Genome Data Viewer
    Location:
    6q32
    Exon count:
    32
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 6 NC_086024.1 (129392298..129457252, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 6 NC_051341.1 (123627529..123692278, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 6 NC_005105.4 (128388084..128453234, complement)

    Chromosome 6 - NC_086024.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134479468 Neighboring gene uncharacterized LOC134479292 Neighboring gene calmin Neighboring gene uncharacterized LOC134479254 Neighboring gene uncharacterized LOC102555497

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Pathways from PubChem

    General gene information

    Markers

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables RNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables RNA endonuclease activity ISO
    Inferred from Sequence Orthology
    more info
     
    enables deoxyribonuclease I activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables double-stranded RNA binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables helicase activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables miRNA binding ISO
    Inferred from Sequence Orthology
    more info
     
    contributes_to pre-miRNA binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables pre-miRNA binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables protein domain specific binding ISO
    Inferred from Sequence Orthology
    more info
     
    enables ribonuclease III activity IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables ribonuclease III activity ISO
    Inferred from Sequence Orthology
    more info
     
    enables siRNA binding ISO
    Inferred from Sequence Orthology
    more info
     
    Process Evidence Code Pubs
    involved_in RISC complex assembly ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within RNA processing ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within angiogenesis ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in apoptotic DNA fragmentation IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    acts_upstream_of_or_within branching morphogenesis of an epithelial tube ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within cardiac muscle cell development ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within cardiac neural crest cell development involved in outflow tract morphogenesis ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within cartilage development ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within cell population proliferation ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in cellular response to glucose stimulus IEP
    Inferred from Expression Pattern
    more info
    PubMed 
    involved_in cellular response to hydrogen peroxide IEP
    Inferred from Expression Pattern
    more info
    PubMed 
    involved_in cellular response to hypoxia IEP
    Inferred from Expression Pattern
    more info
    PubMed 
    involved_in cellular response to tumor necrosis factor IEP
    Inferred from Expression Pattern
    more info
    PubMed 
    acts_upstream_of_or_within cerebral cortex development ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within defense response to virus ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within digestive tract development ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within embryonic hindlimb morphogenesis ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within embryonic limb morphogenesis ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within epidermis morphogenesis ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within ganglion development ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of gene expression ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in global gene silencing by mRNA cleavage ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within hair follicle cell proliferation ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within hair follicle development ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within hair follicle morphogenesis ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within inner ear receptor cell development ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within intestinal epithelial cell development ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within lung development ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within mRNA stabilization ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in meiotic spindle organization ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within miRNA processing ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in miRNA processing ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within multicellular organism growth ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within myoblast differentiation involved in skeletal muscle regeneration ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in negative regulation of Schwann cell proliferation ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of negative regulation of gene expression ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in negative regulation of gene expression ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within negative regulation of glial cell proliferation ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in negative regulation of transcription by RNA polymerase II ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of negative regulation of tumor necrosis factor production ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of negative regulation of tumor necrosis factor-mediated signaling pathway ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in nerve development ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in neuron projection morphogenesis ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within olfactory bulb interneuron differentiation ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within pericentric heterochromatin formation ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in peripheral nervous system myelin formation ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of Schwann cell differentiation ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of collagen biosynthetic process IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in positive regulation of endothelial cell migration IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in positive regulation of endothelial cell-matrix adhesion via fibronectin IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    involved_in positive regulation of establishment of endothelial barrier IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    acts_upstream_of_or_within positive regulation of gene expression ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of gene expression ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of hepatic stellate cell proliferation IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    acts_upstream_of_or_within positive regulation of miRNA metabolic process ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within positive regulation of myelination ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of myelination ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of transcription by RNA polymerase II ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in positive regulation of vascular endothelial cell proliferation IMP
    Inferred from Mutant Phenotype
    more info
    PubMed 
    acts_upstream_of_or_within post-embryonic development ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in pre-miRNA processing IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    acts_upstream_of_or_within pre-miRNA processing ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in pre-miRNA processing ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within regulation of RNA metabolic process ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within regulation of cell cycle ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within regulation of enamel mineralization ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within regulation of epithelial cell differentiation ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within regulation of gene expression ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within regulation of inflammatory response ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within regulation of miRNA metabolic process ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within regulation of muscle cell apoptotic process ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within regulation of myelination ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within regulation of neurogenesis ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within regulation of neuron differentiation ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within regulation of odontogenesis of dentin-containing tooth ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within regulation of oligodendrocyte differentiation ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in regulation of protein phosphorylation ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within regulation of regulatory T cell differentiation ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within regulation of stem cell differentiation ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within regulation of viral genome replication ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within regulatory ncRNA-mediated post-transcriptional gene silencing ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within reproductive structure development ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in siRNA processing IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    acts_upstream_of_or_within siRNA processing ISO
    Inferred from Sequence Orthology
    more info
     
    involved_in siRNA processing ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within spermatogonial cell division ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within spinal cord motor neuron differentiation ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within spindle assembly ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within spleen development ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within stem cell population maintenance ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within trophectodermal cell proliferation ISO
    Inferred from Sequence Orthology
    more info
     
    acts_upstream_of_or_within zygote asymmetric cell division ISO
    Inferred from Sequence Orthology
    more info
     
    Component Evidence Code Pubs
    NOT part_of RISC complex ISO
    Inferred from Sequence Orthology
    more info
     
    part_of RISC complex ISO
    Inferred from Sequence Orthology
    more info
     
    part_of RISC-loading complex IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    part_of RISC-loading complex ISO
    Inferred from Sequence Orthology
    more info
     
    located_in axon IDA
    Inferred from Direct Assay
    more info
    PubMed 
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in cytoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    located_in dendrite IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in endoplasmic reticulum-Golgi intermediate compartment IDA
    Inferred from Direct Assay
    more info
    PubMed 
    located_in extracellular exosome ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in glutamatergic synapse ISO
    Inferred from Sequence Orthology
    more info
     
    located_in growth cone IDA
    Inferred from Direct Assay
    more info
    PubMed 
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in perinuclear region of cytoplasm ISO
    Inferred from Sequence Orthology
    more info
     
    is_active_in postsynaptic density, intracellular component ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    endoribonuclease Dicer
    Names
    Dicer1, Dcr-1 homolog
    dicer 1, ribonuclease type III
    NP_001414144.1
    XP_017449994.1
    XP_038969286.1
    XP_038969290.1
    XP_038969291.1
    XP_038969292.1
    XP_063117841.1
    XP_063117842.1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001427215.1NP_001414144.1  endoribonuclease Dicer

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000006
      UniProtKB/TrEMBL
      A6JER2, E9PU15
      Related
      ENSRNOP00000109133.1, ENSRNOT00000147513.1

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086024.1 Reference GRCr8

      Range
      129392298..129457252 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063261772.1XP_063117842.1  endoribonuclease Dicer isoform X3

      Related
      ENSRNOP00000101022.1, ENSRNOT00000126505.1
    2. XM_039113363.2XP_038969291.1  endoribonuclease Dicer isoform X2

      Conserved Domains (8) summary
      smart00535
      Location:12661357
      RIBOc; Ribonuclease III family
      cd00593
      Location:16481812
      RIBOc; Ribonuclease III C terminal domain. This group consists of eukaryotic, bacterial and archeal ribonuclease III (RNAse III) proteins. RNAse III is a double stranded RNA-specific endonuclease. Prokaryotic RNAse III is important in post-transcriptional ...
      cd02843
      Location:856978
      PAZ_dicer_like; PAZ domain, dicer_like subfamily. Dicer is an RNAse involved in cleaving dsRNA in the RNA interference pathway. It generates dsRNAs which are approximately 20 bp long (siRNAs), which in turn target hydrolysis of homologous RNAs. PAZ domains are named ...
      cd15903
      Location:241335
      Dicer_PBD; Partner-binding domain of the endoribonuclease Dicer
      cd18802
      Location:342534
      SF2_C_dicer; C-terminal helicase domain of the endoribonuclease Dicer
      cd18034
      Location:19209
      DEXHc_dicer; DEXH-box helicase domain of endoribonuclease Dicer
      cd10843
      Location:18171879
      DSRM_DICER; double-stranded RNA binding motif of endoribonuclease Dicer and similar proteins
      pfam03368
      Location:600688
      Dicer_dimer; Dicer dimerization domain
    3. XM_039113362.2XP_038969290.1  endoribonuclease Dicer isoform X2

      Related
      ENSRNOP00000014405.7, ENSRNOT00000014405.9
      Conserved Domains (8) summary
      smart00535
      Location:12661357
      RIBOc; Ribonuclease III family
      cd00593
      Location:16481812
      RIBOc; Ribonuclease III C terminal domain. This group consists of eukaryotic, bacterial and archeal ribonuclease III (RNAse III) proteins. RNAse III is a double stranded RNA-specific endonuclease. Prokaryotic RNAse III is important in post-transcriptional ...
      cd02843
      Location:856978
      PAZ_dicer_like; PAZ domain, dicer_like subfamily. Dicer is an RNAse involved in cleaving dsRNA in the RNA interference pathway. It generates dsRNAs which are approximately 20 bp long (siRNAs), which in turn target hydrolysis of homologous RNAs. PAZ domains are named ...
      cd15903
      Location:241335
      Dicer_PBD; Partner-binding domain of the endoribonuclease Dicer
      cd18802
      Location:342534
      SF2_C_dicer; C-terminal helicase domain of the endoribonuclease Dicer
      cd18034
      Location:19209
      DEXHc_dicer; DEXH-box helicase domain of endoribonuclease Dicer
      cd10843
      Location:18171879
      DSRM_DICER; double-stranded RNA binding motif of endoribonuclease Dicer and similar proteins
      pfam03368
      Location:600688
      Dicer_dimer; Dicer dimerization domain
    4. XM_039113358.2XP_038969286.1  endoribonuclease Dicer isoform X1

      UniProtKB/TrEMBL
      A6JER2, E9PU15
      Conserved Domains (8) summary
      smart00535
      Location:12961387
      RIBOc; Ribonuclease III family
      cd00593
      Location:16781842
      RIBOc; Ribonuclease III C terminal domain. This group consists of eukaryotic, bacterial and archeal ribonuclease III (RNAse III) proteins. RNAse III is a double stranded RNA-specific endonuclease. Prokaryotic RNAse III is important in post-transcriptional ...
      cd02843
      Location:8861008
      PAZ_dicer_like; PAZ domain, dicer_like subfamily. Dicer is an RNAse involved in cleaving dsRNA in the RNA interference pathway. It generates dsRNAs which are approximately 20 bp long (siRNAs), which in turn target hydrolysis of homologous RNAs. PAZ domains are named ...
      cd15903
      Location:271365
      Dicer_PBD; Partner-binding domain of the endoribonuclease Dicer
      cd18802
      Location:372564
      SF2_C_dicer; C-terminal helicase domain of the endoribonuclease Dicer
      cd18034
      Location:42239
      DEXHc_dicer; DEXH-box helicase domain of endoribonuclease Dicer
      cd10843
      Location:18471909
      DSRM_DICER; double-stranded RNA binding motif of endoribonuclease Dicer and similar proteins
      pfam03368
      Location:630718
      Dicer_dimer; Dicer dimerization domain
    5. XM_039113364.2XP_038969292.1  endoribonuclease Dicer isoform X2

      Conserved Domains (8) summary
      smart00535
      Location:12661357
      RIBOc; Ribonuclease III family
      cd00593
      Location:16481812
      RIBOc; Ribonuclease III C terminal domain. This group consists of eukaryotic, bacterial and archeal ribonuclease III (RNAse III) proteins. RNAse III is a double stranded RNA-specific endonuclease. Prokaryotic RNAse III is important in post-transcriptional ...
      cd02843
      Location:856978
      PAZ_dicer_like; PAZ domain, dicer_like subfamily. Dicer is an RNAse involved in cleaving dsRNA in the RNA interference pathway. It generates dsRNAs which are approximately 20 bp long (siRNAs), which in turn target hydrolysis of homologous RNAs. PAZ domains are named ...
      cd15903
      Location:241335
      Dicer_PBD; Partner-binding domain of the endoribonuclease Dicer
      cd18802
      Location:342534
      SF2_C_dicer; C-terminal helicase domain of the endoribonuclease Dicer
      cd18034
      Location:19209
      DEXHc_dicer; DEXH-box helicase domain of endoribonuclease Dicer
      cd10843
      Location:18171879
      DSRM_DICER; double-stranded RNA binding motif of endoribonuclease Dicer and similar proteins
      pfam03368
      Location:600688
      Dicer_dimer; Dicer dimerization domain
    6. XM_063261771.1XP_063117841.1  endoribonuclease Dicer isoform X1

      UniProtKB/TrEMBL
      A6JER2, E9PU15
    7. XM_017594505.3XP_017449994.1  endoribonuclease Dicer isoform X4