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    Ajm1 apical junction component 1 homolog [ Rattus norvegicus (Norway rat) ]

    Gene ID: 362083, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Ajm1provided by RGD
    Official Full Name
    apical junction component 1 homologprovided by RGD
    Primary source
    RGD:1560470
    See related
    EnsemblRapid:ENSRNOG00000033863 AllianceGenome:RGD:1560470
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1560470
    Summary
    Predicted to be involved in cell-cell junction organization. Predicted to be active in apical junction complex and plasma membrane. Orthologous to human AJM1 (apical junction component 1 homolog). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Brain (RPKM 27.3), Kidney (RPKM 5.2) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Ajm1 in Genome Data Viewer
    Location:
    3p13
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 3 NC_086021.1 (28793078..28799459, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 3 NC_051338.1 (8394942..8401323, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 3 NC_005102.4 (2799032..2806686, complement)

    Chromosome 3 - NC_086021.1Genomic Context describing neighboring genes Neighboring gene MAM domain containing 4 Neighboring gene phosphohistidine phosphatase 1 Neighboring gene RAB, member RAS oncogene family-like 6 Neighboring gene coiled-coil domain containing 183

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Process Evidence Code Pubs
    involved_in cell-cell junction organization IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in apical junction complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    apical junction component 1 homolog
    Names
    uncharacterized protein C9orf172 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001399246.1 → NP_001386175.1  apical junction component 1 homolog

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000003
      UniProtKB/TrEMBL
      A0A8I5ZXP9, D3ZTF0, M0RAB5
      Related
      ENSRNOP00000049690.6, ENSRNOT00000040995.6
      Conserved Domains (2) summary
      PHA03378
      Location:91 → 187
      PHA03378; EBNA-3B; Provisional
      pfam01753
      Location:668 → 710
      zf-MYND; MYND finger

    2. NM_001399247.1 → NP_001386176.1  apical junction component 1 homolog

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000003
      UniProtKB/TrEMBL
      A0A8I5ZXP9, D3ZTF0, M0RAB5
      Related
      ENSRNOP00000109284.1, ENSRNOT00000125022.1
      Conserved Domains (2) summary
      PHA03378
      Location:91 → 187
      PHA03378; EBNA-3B; Provisional
      pfam01753
      Location:668 → 710
      zf-MYND; MYND finger

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086021.1 Reference GRCr8

      Range
      28793078..28799459 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039106117.2 → XP_038962045.1  apical junction component 1 homolog isoform X1

      UniProtKB/TrEMBL
      A0A8I5ZXP9, D3ZTF0, M0RAB5
      Conserved Domains (2) summary
      PHA03378
      Location:91 → 187
      PHA03378; EBNA-3B; Provisional
      pfam01753
      Location:668 → 710
      zf-MYND; MYND finger

    2. XM_039106116.2 → XP_038962044.1  apical junction component 1 homolog isoform X1

      UniProtKB/TrEMBL
      A0A8I5ZXP9, D3ZTF0, M0RAB5
      Conserved Domains (2) summary
      PHA03378
      Location:91 → 187
      PHA03378; EBNA-3B; Provisional
      pfam01753
      Location:668 → 710
      zf-MYND; MYND finger
    Nucleotide Protein Strain
    Heading Accession and Version

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