U.S. flag

An official website of the United States government

Links from GEO Profiles

    • Showing Current items.

    Plac8 placenta associated 8 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 360914, updated on 9-Dec-2024

    Summary

    Symbol
    Plac8provided by RGD
    Full Name
    placenta associated 8provided by RGD
    Primary source
    RGD:1308102
    See related
    EnsemblRapid:ENSRNOG00000002217 AllianceGenome:RGD:1308102
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to enable chromatin binding activity. Predicted to be involved in positive regulation of cold-induced thermogenesis and positive regulation of transcription by RNA polymerase II. Predicted to act upstream of or within several processes, including brown fat cell differentiation; defense response to bacterium; and response to cold. Biomarker of glucose intolerance. Orthologous to human PLAC8 (placenta associated 8). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Spleen (RPKM 3060.9), Thymus (RPKM 1116.1) and 3 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Plac8 in Genome Data Viewer
    Location:
    14p22
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 14 NC_086032.1 (9356950..9378586)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 14 NC_051349.1 (9052601..9074264)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 14 NC_005113.4 (10692799..10714556)

    Chromosome 14 - NC_086032.1Genomic Context describing neighboring genes Neighboring gene nuclear receptor-binding factor 2-like Neighboring gene uncharacterized LOC134481703 Neighboring gene ubiquitin-conjugating enzyme E2 variant 2-like Neighboring gene COP9 signalosome subunit 4 Neighboring gene uncharacterized LOC102550950

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General gene information

    Gene Ontology Provided by RGD

    General protein information

    Preferred Names
    placenta-specific gene 8 protein
    Names
    placenta-specific 8

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001108353.1NP_001101823.1  placenta-specific gene 8 protein

      See identical proteins and their annotated locations for NP_001101823.1

      Status: PROVISIONAL

      Source sequence(s)
      CH474022
      UniProtKB/TrEMBL
      B5DF36, F7EWR1
      Conserved Domains (1) summary
      cl04722
      Location:21105
      PLAC8; PLAC8 family

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086032.1 Reference GRCr8

      Range
      9356950..9378586
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063273327.1XP_063129397.1  placenta-specific gene 8 protein isoform X1

      UniProtKB/TrEMBL
      B5DF36, F7EWR1
      Related
      ENSRNOP00000003012.6, ENSRNOT00000003012.8
    External link. Please review our privacy policy.