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    Edrf1 erythroid differentiation regulatory factor 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 309069, updated on 9-Dec-2024

    Summary

    Official Symbol
    Edrf1provided by RGD
    Official Full Name
    erythroid differentiation regulatory factor 1provided by RGD
    Primary source
    RGD:1306820
    See related
    EnsemblRapid:ENSRNOG00000017728 AllianceGenome:RGD:1306820
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1306820
    Summary
    Predicted to be involved in positive regulation of DNA-templated transcription. Orthologous to human EDRF1 (erythroid differentiation regulatory factor 1). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Thymus (RPKM 86.1), Spleen (RPKM 70.7) and 9 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Edrf1 in Genome Data Viewer
    Location:
    1q41
    Exon count:
    25
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (197869873..197908693)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (188441514..188478743)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (205706023..205743676)

    Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120099946 Neighboring gene uncharacterized LOC103690347 Neighboring gene uncharacterized LOC102552907 Neighboring gene matrix metallopeptidase 21 Neighboring gene uroporphyrinogen III synthase Neighboring gene BRCA2 and CDKN1A interacting protein

    Genomic regions, transcripts, and products

    General protein information

    Preferred Names
    erythroid differentiation-related factor 1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001107557.1NP_001101027.1  erythroid differentiation-related factor 1

      See identical proteins and their annotated locations for NP_001101027.1

      Status: PROVISIONAL

      Source sequence(s)
      CH473953
      UniProtKB/TrEMBL
      A6HX21, A6HX22, D3ZRW6
      Related
      ENSRNOP00000023873.3, ENSRNOT00000023877.5

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086019.1 Reference GRCr8

      Range
      197869873..197908693
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006230436.5XP_006230498.1  erythroid differentiation-related factor 1 isoform X1

      See identical proteins and their annotated locations for XP_006230498.1

      UniProtKB/TrEMBL
      A0A0G2K4K6, A6HX20, A6HX22
    2. XM_063263753.1XP_063119823.1  erythroid differentiation-related factor 1 isoform X1

      UniProtKB/TrEMBL
      A0A0G2K4K6, A6HX20, A6HX22
    3. XM_039078803.2XP_038934731.1  erythroid differentiation-related factor 1 isoform X4

    4. XM_008759889.4XP_008758111.1  erythroid differentiation-related factor 1 isoform X2

      UniProtKB/TrEMBL
      A6HX22
      Related
      ENSRNOP00000073079.2, ENSRNOT00000089957.3
    5. XM_063263756.1XP_063119826.1  erythroid differentiation-related factor 1 isoform X3

      UniProtKB/TrEMBL
      A6HX22