Slc25a17 solute carrier family 25 member 17 [Rattus norvegicus (Norway rat)] - Gene

Summary

Official Symbol: Slc25a17provided by RGD
Official Full Name: solute carrier family 25 member 17provided by RGD
Primary source: RGD:1311498
See related: EnsemblRapid:ENSRNOG00000076430 AllianceGenome:RGD:1311498
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary: Predicted to enable nucleobase-containing compound transmembrane transporter activity and protein-folding chaperone binding activity. Predicted to be involved in fatty acid beta-oxidation; fatty acid transport; and nucleotide transport. Predicted to be located in peroxisomal membrane. Orthologous to human SLC25A17 (solute carrier family 25 member 17). [provided by Alliance of Genome Resources, Dec 2024]
Expression: Biased expression in Adrenal (RPKM 249.3), Kidney (RPKM 168.8) and 9 other tissues See more
Orthologs: human mouse all
NEW: Try the new Gene table
Try the new Transcript table

Genomic context

Location:: 7q34

Exon count:: 9

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	7	NC_086025.1 (114724533..114767163, complement)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	7	NC_051342.1 (112844375..112887014, complement)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	7	NC_005106.4 (122539293..122581777, complement)

Chromosome 7 - NC_086025.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to reference sequence details

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help

See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

Go to the top of the page Help

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

Go to the top of the page Help

Gene Ontology Provided by RGD

Function	Evidence Code	Pubs
enables ADP transmembrane transporter activity	ISO Inferred from Sequence Orthology more info
enables AMP transmembrane transporter activity	ISO Inferred from Sequence Orthology more info
enables ATP transmembrane transporter activity	ISO Inferred from Sequence Orthology more info
enables FAD transmembrane transporter activity	ISO Inferred from Sequence Orthology more info
enables FMN transmembrane transporter activity	ISO Inferred from Sequence Orthology more info
enables NAD transmembrane transporter activity	ISO Inferred from Sequence Orthology more info
enables coenzyme A transmembrane transporter activity	ISO Inferred from Sequence Orthology more info
enables protein dimerization activity	IEA Inferred from Electronic Annotation more info
enables protein-folding chaperone binding	ISO Inferred from Sequence Orthology more info

Process	Evidence Code	Pubs
involved_in ADP transport	IEA Inferred from Electronic Annotation more info
involved_in AMP transport	IEA Inferred from Electronic Annotation more info
involved_in ATP transport	ISO Inferred from Sequence Orthology more info
involved_in FAD transmembrane transport	IEA Inferred from Electronic Annotation more info
involved_in NAD transmembrane transport	IEA Inferred from Electronic Annotation more info
involved_in coenzyme A transmembrane transport	IEA Inferred from Electronic Annotation more info
involved_in fatty acid beta-oxidation	ISO Inferred from Sequence Orthology more info
involved_in fatty acid transport	ISO Inferred from Sequence Orthology more info
involved_in nucleotide transmembrane transport	ISO Inferred from Sequence Orthology more info

Component	Evidence Code	Pubs
located_in peroxisomal membrane	ISO Inferred from Sequence Orthology more info
located_in peroxisome	ISO Inferred from Sequence Orthology more info

General protein information

Go to the top of the page Help

Preferred Names: peroxisomal membrane protein PMP34

Names: peroxisomal membrane protein, 34kDa; peroxisomal membrane protein, 34kDa), member 17; solute carrier family 25 (mitochondrial carrier, peroxisomal membrane protein), member 17; solute carrier family 25 (mitochondrial carrier; peroxisomal membrane protein, 34kDa), member 17

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001126269.1 → NP_001119741.1 peroxisomal membrane protein PMP34

See identical proteins and their annotated locations for NP_001119741.1

Status: PROVISIONAL

Source sequence(s)

CH473950

UniProtKB/TrEMBL

A6HSZ1, B2GUY8

Related

ENSRNOP00000088770.2, ENSRNOT00000109011.2

Conserved Domains (1) summary

pfam00153
Location:97 → 197

Mito_carr; Mitochondrial carrier protein

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

NC_086025.1 Reference GRCr8

Range

114724533..114767163 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_039078840.2 → XP_038934768.1 peroxisomal membrane protein PMP34 isoform X1

UniProtKB/TrEMBL

A6HSZ4

Conserved Domains (1) summary

pfam00153
Location:10 → 95

Mito_carr; Mitochondrial carrier protein