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    Tspan31 tetraspanin 31 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 362890, updated on 9-Dec-2024

    Summary

    Official Symbol
    Tspan31provided by RGD
    Official Full Name
    tetraspanin 31provided by RGD
    Primary source
    RGD:1309876
    See related
    EnsemblRapid:ENSRNOG00000025592 AllianceGenome:RGD:1309876
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Sas
    Summary
    Predicted to be located in membrane. Orthologous to human TSPAN31 (tetraspanin 31). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Liver (RPKM 695.3), Adrenal (RPKM 307.2) and 9 other tissues See more
    Orthologs
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    Genomic context

    See Tspan31 in Genome Data Viewer
    Location:
    7q22
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 7 NC_086025.1 (64774881..64783534, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 7 NC_051342.1 (62889552..62892428, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 7 NC_005106.4 (70352679..70355555, complement)

    Chromosome 7 - NC_086025.1Genomic Context describing neighboring genes Neighboring gene cytochrome P450, family 27, subfamily b, polypeptide 1 Neighboring gene membrane associated ring-CH-type finger 9 Neighboring gene cyclin-dependent kinase 4 Neighboring gene ArfGAP with GTPase domain, ankyrin repeat and PH domain 2 Neighboring gene OS9, endoplasmic reticulum lectin Neighboring gene uncharacterized LOC134479707

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General gene information

    Clone Names

    • MGC105551

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    located_in membrane  

    General protein information

    Preferred Names
    tetraspanin-31
    Names
    sarcoma amplified sequence
    sarcoma-amplified sequence homolog
    tspan-31

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001008378.1NP_001008379.1  tetraspanin-31

      See identical proteins and their annotated locations for NP_001008379.1

      Status: PROVISIONAL

      Source sequence(s)
      BC086452
      UniProtKB/Swiss-Prot
      Q5U1V9
      UniProtKB/TrEMBL
      A6HQS1
      Conserved Domains (1) summary
      pfam00335
      Location:8199
      Tetraspannin; Tetraspanin family

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086025.1 Reference GRCr8

      Range
      64774881..64783534 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063263799.1XP_063119869.1  tetraspanin-31 isoform X1

      UniProtKB/Swiss-Prot
      Q5U1V9
      UniProtKB/TrEMBL
      A6HQS1
    2. XM_063263798.1XP_063119868.1  tetraspanin-31 isoform X1

      UniProtKB/Swiss-Prot
      Q5U1V9
      UniProtKB/TrEMBL
      A6HQS1
    3. XM_017594923.3XP_017450412.1  tetraspanin-31 isoform X2

      UniProtKB/TrEMBL
      A0A8L2ULA8
      Related
      ENSRNOP00000036976.5, ENSRNOT00000031272.7
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