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    C1h10orf143 similar to human chromosome 10 open reading frame 143 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 100362342, updated on 9-Dec-2024

    Summary

    Official Symbol
    C1h10orf143provided by RGD
    Official Full Name
    similar to human chromosome 10 open reading frame 143provided by RGD
    Primary source
    RGD:2318344
    See related
    EnsemblRapid:ENSRNOG00000050554 AllianceGenome:RGD:2318344
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Orthologous to human C10orf143 (chromosome 10 open reading frame 143). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Spleen (RPKM 44.8), Thymus (RPKM 42.2) and 9 other tissues See more
    Orthologs
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    Genomic context

    See C1h10orf143 in Genome Data Viewer
    Location:
    1q41
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (201614151..201654142, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (192184440..192222676, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (209710798..209749973, complement)

    Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene nucleolin, pseudogene 4 Neighboring gene nucleolin, pseudogene 6 Neighboring gene uncharacterized LOC134485190 Neighboring gene glutaredoxin 3 Neighboring gene uncharacterized LOC134485189

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General protein information

    Preferred Names
    rCG47764-like
    Names
    uncharacterized protein C10orf143 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001401704.1NP_001388633.1  rCG47764-like

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000001
      UniProtKB/TrEMBL
      A6HX83, A6HX84
      Related
      ENSRNOP00000067789.3, ENSRNOT00000073093.4

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086019.1 Reference GRCr8

      Range
      201614151..201654142 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_005499517.2 RNA Sequence