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    Ctxn2 cortexin 2 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 100302373, updated on 9-Dec-2024

    Summary

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    Symbol
    Ctxn2provided by RGD
    Full Name
    cortexin 2provided by RGD
    Primary source
    RGD:2311261
    See related
    EnsemblRapid:ENSRNOG00000037146 AllianceGenome:RGD:2311261
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to be located in membrane. Orthologous to human CTXN2 (cortexin 2). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Restricted expression toward (RPKM 28.9) See more
    Orthologs
    human mouse all
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    Genomic context

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    See Ctxn2 in Genome Data Viewer
    Location:
    3q36
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 3 NC_086021.1 (132842237..132854774)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 3 NC_051338.1 (112390972..112401321)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 3 NC_005102.4 (117406300..117416786)

    Chromosome 3 - NC_086021.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC108350455 Neighboring gene solute carrier family 24 member 5 Neighboring gene myelin expression factor 2 Neighboring gene solute carrier family 12 member 1 Neighboring gene ribosomal protein L32, pseudogene 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    cortexin-2

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001162935.1 → NP_001156407.1  cortexin-2

      See identical proteins and their annotated locations for NP_001156407.1

      Status: VALIDATED

      Source sequence(s)
      AW524713, BF562671
      UniProtKB/TrEMBL
      D4A1T4
      Related
      ENSRNOP00000052906.3, ENSRNOT00000056054.5
      Conserved Domains (1) summary
      pfam11057
      Location:10 → 82
      Cortexin; Cortexin of kidney

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086021.1 Reference GRCr8

      Range
      132842237..132854774
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039104078.2 → XP_038960006.1  cortexin-2 isoform X1

      UniProtKB/TrEMBL
      D4A1T4
      Conserved Domains (1) summary
      pfam11057
      Location:10 → 82
      Cortexin; Cortexin of kidney

    2. XM_006234891.5 → XP_006234953.1  cortexin-2 isoform X1

      See identical proteins and their annotated locations for XP_006234953.1

      UniProtKB/TrEMBL
      D4A1T4
      Conserved Domains (1) summary
      pfam11057
      Location:10 → 82
      Cortexin; Cortexin of kidney

    3. XM_039104079.2 → XP_038960007.1  cortexin-2 isoform X1

      UniProtKB/TrEMBL
      D4A1T4
      Conserved Domains (1) summary
      pfam11057
      Location:10 → 82
      Cortexin; Cortexin of kidney
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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