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    C5h6orf163 similar to human chromosome 6 open reading frame 163 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 500434, updated on 9-Dec-2024

    Summary

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    Official Symbol
    C5h6orf163provided by RGD
    Official Full Name
    similar to human chromosome 6 open reading frame 163provided by RGD
    Primary source
    RGD:1563056
    See related
    EnsemblRapid:ENSRNOG00000009178 AllianceGenome:RGD:1563056
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1563056
    Summary
    Orthologous to human C6orf163 (chromosome 6 open reading frame 163). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Testes (RPKM 33.8), Kidney (RPKM 1.9) and 1 other tissue See more
    Orthologs
    human mouse all
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    Genomic context

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    See C5h6orf163 in Genome Data Viewer
    Location:
    5q21
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 5 NC_086023.1 (54113073..54132787, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 5 NC_051340.1 (49316784..49329164, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (50210303..50221560, complement)

    Chromosome 5 - NC_086023.1Genomic Context describing neighboring genes Neighboring gene arginyl-tRNA synthetase 2, mitochondrial Neighboring gene solute carrier family 35 member A1 Neighboring gene cilia and flagella associated protein 206 Neighboring gene small integral membrane protein 8 Neighboring gene small nucleolar RNA SNORA17

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein C6orf163 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086023.1 Reference GRCr8

      Range
      54113073..54132787 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063288522.1 → XP_063144592.1  uncharacterized protein C6orf163 homolog isoform X2

    2. XM_575796.7 → XP_575796.2  uncharacterized protein C6orf163 homolog isoform X1

      See identical proteins and their annotated locations for XP_575796.2

      UniProtKB/TrEMBL
      D3ZAP6
      Related
      ENSRNOP00000012164.5, ENSRNOT00000012164.8
      Conserved Domains (1) summary
      TIGR02168
      Location:48 → 284
      SMC_prok_B; chromosome segregation protein SMC, common bacterial type

    3. XM_006238003.5 → XP_006238065.1  uncharacterized protein C6orf163 homolog isoform X2

      See identical proteins and their annotated locations for XP_006238065.1

      Conserved Domains (1) summary
      pfam09731
      Location:23 → 128
      Mitofilin; Mitochondrial inner membrane protein
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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