U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    C5h1orf185 similar to human chromosome 1 open reading frame 185 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 689589, updated on 9-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    C5h1orf185provided by RGD
    Official Full Name
    similar to human chromosome 1 open reading frame 185provided by RGD
    Primary source
    RGD:1591038
    See related
    EnsemblRapid:ENSRNOG00000009138 AllianceGenome:RGD:1591038
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Orthologous to human C1orf185 (chromosome 1 open reading frame 185). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Restricted expression toward (RPKM 287.0) See more
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See C5h1orf185 in Genome Data Viewer
    Location:
    5q35
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 5 NC_086023.1 (129504609..129524506, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 5 NC_051340.1 (124276074..124295881, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (129154544..129175596, complement)

    Chromosome 5 - NC_086023.1Genomic Context describing neighboring genes Neighboring gene tetratricopeptide repeat domain 39A Neighboring gene ring finger protein 11 Neighboring gene RNA, U4 small nuclear 2 Neighboring gene small nucleolar RNA SNORA17 Neighboring gene enolase 1, pseudogene 10

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Gene and alternative splicing annotation with AIR. Florea L, et al. Genome Res, 2005 Jan. PMID 15632090, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    General protein information

    Go to the top of the page Help
    Preferred Names
    uncharacterized protein C1orf185 homolog
    Names
    rCG50434-like

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001271399.2 → NP_001258328.1  uncharacterized protein C1orf185 homolog

      See identical proteins and their annotated locations for NP_001258328.1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000005
      UniProtKB/TrEMBL
      A6JYZ2
      Conserved Domains (1) summary
      pfam15842
      Location:7 → 188
      DUF4718; Domain of unknown function (DUF4718)

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086023.1 Reference GRCr8

      Range
      129504609..129524506 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039110795.2 → XP_038966723.1  uncharacterized protein C1orf185 homolog isoform X3

      Conserved Domains (1) summary
      pfam15842
      Location:7 → 218
      DUF4718; Domain of unknown function (DUF4718)

    2. XM_063288442.1 → XP_063144512.1  uncharacterized protein C1orf185 homolog isoform X5

      UniProtKB/TrEMBL
      A6JYZ3, F1LT57
      Related
      ENSRNOP00000012112.7, ENSRNOT00000012112.9

    3. XM_039110796.2 → XP_038966724.1  uncharacterized protein C1orf185 homolog isoform X4

      Related
      ENSRNOP00000103616.1, ENSRNOT00000142061.1
      Conserved Domains (1) summary
      pfam15842
      Location:3 → 214
      DUF4718; Domain of unknown function (DUF4718)

    4. XM_039110793.2 → XP_038966721.1  uncharacterized protein C1orf185 homolog isoform X1

      Conserved Domains (1) summary
      pfam15842
      Location:56 → 267
      DUF4718; Domain of unknown function (DUF4718)

    5. XM_039110794.2 → XP_038966722.1  uncharacterized protein C1orf185 homolog isoform X2

      Conserved Domains (1) summary
      pfam15842
      Location:56 → 237
      DUF4718; Domain of unknown function (DUF4718)

    6. XM_039110797.2 → XP_038966725.1  uncharacterized protein C1orf185 homolog isoform X6

      Conserved Domains (1) summary
      pfam15842
      Location:56 → 148
      DUF4718; Domain of unknown function (DUF4718)
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools