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    Knop1 lysine-rich nucleolar protein 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 499255, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Knop1provided by RGD
    Official Full Name
    lysine-rich nucleolar protein 1provided by RGD
    Primary source
    RGD:1565096
    See related
    EnsemblRapid:ENSRNOG00000070112 AllianceGenome:RGD:1565096
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1565096
    Summary
    Orthologous to human KNOP1 (lysine rich nucleolar protein 1). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Thymus (RPKM 96.2), Spleen (RPKM 84.6) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Knop1 in Genome Data Viewer
    Location:
    1q35
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (182611758..182630610, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (173180400..173199253, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (188566964..188571954, complement)

    Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene centriolar coiled-coil protein 110 Neighboring gene VPS35 endosomal protein sorting factor like Neighboring gene small nucleolar RNA SNORA24 Neighboring gene small nucleolar RNA SNORA44 Neighboring gene IQ motif containing K Neighboring gene uncharacterized LOC134485172

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    lysine-rich nucleolar protein 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001399775.1 → NP_001386704.1  lysine-rich nucleolar protein 1 isoform 1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000001
      UniProtKB/TrEMBL
      A0A8I6AUQ0
      Related
      ENSRNOP00000097660.1, ENSRNOT00000096905.2

    2. NM_001399776.1 → NP_001386705.1  lysine-rich nucleolar protein 1 isoform 2

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000001
      UniProtKB/TrEMBL
      A0A8I6AUQ0
      Related
      ENSRNOP00000076425.2, ENSRNOT00000118077.2

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086019.1 Reference GRCr8

      Range
      182611758..182630610 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039087781.2 → XP_038943709.1  lysine-rich nucleolar protein 1 isoform X1

      UniProtKB/TrEMBL
      A0A8I6AUQ0
      Conserved Domains (1) summary
      pfam15477
      Location:367 → 440
      SMAP; Small acidic protein family

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_001134611.2: Suppressed sequence

      Description
      NM_001134611.2: This RefSeq was removed because currently there is insufficient support for the transcript and the protein.
    Nucleotide Protein Strain
    Heading Accession and Version

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