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    Krba1 KRAB-A domain containing 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 362358, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Krba1provided by RGD
    Official Full Name
    KRAB-A domain containing 1provided by RGD
    Primary source
    RGD:1306967
    See related
    EnsemblRapid:ENSRNOG00000007405 AllianceGenome:RGD:1306967
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1306967
    Summary
    Orthologous to human KRBA1 (KRAB-A domain containing 1). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Thymus (RPKM 65.7), Testes (RPKM 57.7) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Krba1 in Genome Data Viewer
    Location:
    4q24
    Exon count:
    20
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 4 NC_086022.1 (78672384..78693984)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 4 NC_051339.1 (77341654..77363075)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 4 NC_005103.4 (78024867..78046330)

    Chromosome 4 - NC_086022.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134486766 Neighboring gene transfer RNA cysteine (anticodon GCA) 27 Neighboring gene transfer RNA cysteine (anticodon GCA) 28 Neighboring gene zinc finger protein 467 Neighboring gene SCO-spondin Neighboring gene uncharacterized LOC120102263

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    KRAB-A domain containing 1; protein KRBA1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001431763.1 → NP_001418692.1  KRAB-A domain containing 1 isoform a

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000004
      UniProtKB/TrEMBL
      A6K0E3, D4A2C1

    2. NM_001431764.1 → NP_001418693.1  KRAB-A domain containing 1 isoform b

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000004
      UniProtKB/TrEMBL
      A6K0E3

    3. NM_001431765.1 → NP_001418694.1  KRAB-A domain containing 1 isoform c

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000004
      UniProtKB/TrEMBL
      A0A8I5ZXE9

    4. NM_001431766.1 → NP_001418695.1  KRAB-A domain containing 1 isoform d

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000004
      UniProtKB/TrEMBL
      A6K0E3

    5. NM_001431767.1 → NP_001418696.1  KRAB-A domain containing 1 isoform e

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000004
      UniProtKB/TrEMBL
      A0A8I6ASV2, A6K0E3

    6. NM_001431768.1 → NP_001418697.1  KRAB-A domain containing 1 isoform e

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000004
      UniProtKB/TrEMBL
      A0A8I6ASV2, A6K0E3

    7. NM_001431769.1 → NP_001418698.1  KRAB-A domain containing 1 isoform f

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000004

    8. NM_001431770.1 → NP_001418699.1  KRAB-A domain containing 1 isoform g

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000004

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086022.1 Reference GRCr8

      Range
      78672384..78693984
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063286958.1 → XP_063143028.1  protein KRBA1 isoform X13

    2. XM_063286953.1 → XP_063143023.1  protein KRBA1 isoform X7

      Related
      ENSRNOP00000111085.1, ENSRNOT00000140223.1

    3. XM_063286956.1 → XP_063143026.1  protein KRBA1 isoform X11

    4. XM_063286948.1 → XP_063143018.1  protein KRBA1 isoform X2

      UniProtKB/TrEMBL
      A6K0E3

    5. XM_063286957.1 → XP_063143027.1  protein KRBA1 isoform X12

    6. XM_039108658.2 → XP_038964586.1  protein KRBA1 isoform X1

      UniProtKB/TrEMBL
      A6K0E3
      Conserved Domains (1) summary
      pfam15287
      Location:250 → 292
      KRBA1; KRBA1 family repeat

    7. XM_063286951.1 → XP_063143021.1  protein KRBA1 isoform X4

      UniProtKB/TrEMBL
      A6K0E3

    8. XM_063286952.1 → XP_063143022.1  protein KRBA1 isoform X6

      UniProtKB/TrEMBL
      A6K0E3

    9. XM_063286950.1 → XP_063143020.1  protein KRBA1 isoform X3

      Related
      ENSRNOP00000040855.5, ENSRNOT00000043856.7

    10. XM_006236447.5 → XP_006236509.1  protein KRBA1 isoform X5

      See identical proteins and their annotated locations for XP_006236509.1

      UniProtKB/TrEMBL
      A6K0E3
      Conserved Domains (3) summary
      smart00349
      Location:8 → 64
      KRAB; krueppel associated box
      pfam01352
      Location:8 → 46
      KRAB; KRAB box
      pfam15287
      Location:229 → 271
      KRBA1; KRBA1 family repeat

    11. XM_063286954.1 → XP_063143024.1  protein KRBA1 isoform X8

      UniProtKB/TrEMBL
      A6K0E3

    12. XM_006236448.5 → XP_006236510.1  protein KRBA1 isoform X9

      Conserved Domains (1) summary
      pfam15287
      Location:194 → 236
      KRBA1; KRBA1 family repeat

    13. XM_039108660.2 → XP_038964588.1  protein KRBA1 isoform X9

      UniProtKB/TrEMBL
      A6K0E3
      Conserved Domains (1) summary
      pfam15287
      Location:194 → 236
      KRBA1; KRBA1 family repeat

    14. XM_063286955.1 → XP_063143025.1  protein KRBA1 isoform X10

      Related
      ENSRNOP00000097535.2, ENSRNOT00000117955.2

    15. XM_039108661.2 → XP_038964589.1  protein KRBA1 isoform X9

      UniProtKB/TrEMBL
      A6K0E3
      Conserved Domains (1) summary
      pfam15287
      Location:194 → 236
      KRBA1; KRBA1 family repeat
    Nucleotide Protein Strain
    Heading Accession and Version

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