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    Zfp11 zinc finger protein 11 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 100363065, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Zfp11provided by RGD
    Official Full Name
    zinc finger protein 11provided by RGD
    Primary source
    RGD:2324824
    See related
    EnsemblRapid:ENSRNOG00000051442 AllianceGenome:RGD:2324824
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to enable metal ion binding activity. Predicted to be located in nucleus. Orthologous to human ZNF546 (zinc finger protein 546). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Kidney (RPKM 42.4), Lung (RPKM 26.1) and 9 other tissues See more
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    Genomic context

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    See Zfp11 in Genome Data Viewer
    Location:
    12q13
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 12 NC_086030.1 (32664312..32676940)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 12 NC_051347.1 (27028067..27040846)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 12 NC_005111.4 (30655245..30668370)

    Chromosome 12 - NC_086030.1Genomic Context describing neighboring genes Neighboring gene septin 14 Neighboring gene 40S ribosomal protein S25 pseudogene Neighboring gene uncharacterized LOC120095935 Neighboring gene matrix metallopeptidase 17 Neighboring gene splicing factor SWAP Neighboring gene uncharacterized LOC134481178

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    zinc finger protein 11

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001408756.1 → NP_001395685.1  zinc finger protein 11

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000012

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086030.1 Reference GRCr8

      Range
      32664312..32676940
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039090098.2 → XP_038946026.1  zinc finger protein 11 isoform X2

      UniProtKB/TrEMBL
      A0A8I6AQ63
      Related
      ENSRNOP00000096006.1, ENSRNOT00000099192.2
      Conserved Domains (4) summary
      COG5048
      Location:29 → 406
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:369 → 389
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cl30559
      Location:506 → 569
      PriA; Primosomal protein N' (replication factor Y) - superfamily II helicase [Replication, recombination and repair]
      pfam13465
      Location:466 → 490
      zf-H2C2_2; Zinc-finger double domain

    2. XM_006249287.5 → XP_006249349.3  zinc finger protein 11 isoform X1

      Related
      ENSRNOP00000073606.3, ENSRNOT00000079144.4
      Conserved Domains (5) summary
      smart00349
      Location:17 → 76
      KRAB; krueppel associated box
      COG5048
      Location:169 → 546
      COG5048; FOG: Zn-finger [General function prediction only]
      sd00017
      Location:509 → 529
      ZF_C2H2; C2H2 Zn finger [structural motif]
      cl30559
      Location:646 → 709
      PriA; Primosomal protein N' (replication factor Y) - superfamily II helicase [Replication, recombination and repair]
      pfam13465
      Location:606 → 630
      zf-H2C2_2; Zinc-finger double domain
    Nucleotide Protein Strain
    Heading Accession and Version

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