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    Zc3hav1l ZC3HAV1 like [ Rattus norvegicus (Norway rat) ]

    Gene ID: 362341, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Zc3hav1lprovided by RGD
    Official Full Name
    ZC3HAV1 likeprovided by RGD
    Primary source
    RGD:1309236
    See related
    EnsemblRapid:ENSRNOG00000013944 AllianceGenome:RGD:1309236
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1309236
    Summary
    Predicted to enable metal ion binding activity. Predicted to be located in cytosol. Orthologous to human ZC3HAV1L (zinc finger CCCH-type containing, antiviral 1 like). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Kidney (RPKM 17.4), Adrenal (RPKM 15.8) and 9 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Zc3hav1l in Genome Data Viewer
    Location:
    4q23
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 4 NC_086022.1 (67957250..67972540, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 4 NC_051339.1 (66994192..67003207, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 4 NC_005103.4 (65988820..66003450, complement)

    Chromosome 4 - NC_086022.1Genomic Context describing neighboring genes Neighboring gene high-mobility group box 1, pseudogene 18 Neighboring gene ATPase H+ transporting V0 subunit a4 Neighboring gene uncharacterized LOC134486756 Neighboring gene transmembrane protein 213 Neighboring gene KIAA1549 homolog Neighboring gene zinc finger CCCH-type containing, antiviral 1 Neighboring gene high mobility group protein B1 pseudogene Neighboring gene intraflagellar transport 56

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in cytosol ISO
    Inferred from Sequence Orthology
    more info
    		  

    General protein information

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    Preferred Names
    zinc finger CCCH-type antiviral protein 1-like
    Names
    zinc finger CCCH-type containing, antiviral 1 like
    zinc finger CCCH-type, antiviral 1-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086022.1 Reference GRCr8

      Range
      67957250..67972540 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_342661.8 → XP_342662.5  zinc finger CCCH-type antiviral protein 1-like

      See identical proteins and their annotated locations for XP_342662.5

      UniProtKB/TrEMBL
      A6IER6, D3ZIC9
      Related
      ENSRNOP00000018645.6, ENSRNOT00000018645.7
    Nucleotide Protein Strain
    Heading Accession and Version

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