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    C7h22orf23 similar to human chromosome 22 open reading frame 23 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 315126, updated on 9-Dec-2024

    Summary

    Official Symbol
    C7h22orf23provided by RGD
    Official Full Name
    similar to human chromosome 22 open reading frame 23provided by RGD
    Primary source
    RGD:1359634
    See related
    EnsemblRapid:ENSRNOG00000011170 AllianceGenome:RGD:1359634
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1359634
    Summary
    Orthologous to human C22orf23 (chromosome 22 open reading frame 23). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Testes (RPKM 215.1), Kidney (RPKM 75.8) and 9 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See C7h22orf23 in Genome Data Viewer
    Location:
    7q34
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 7 NC_086025.1 (112585341..112592938, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 7 NC_051342.1 (110704894..110712485, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 7 NC_005106.4 (120372874..120380465, complement)

    Chromosome 7 - NC_086025.1Genomic Context describing neighboring genes Neighboring gene transfer RNA valine (anticodon AAC) 17 Neighboring gene eukaryotic translation initiation factor 3, subunit L Neighboring gene MICAL-like 1 Neighboring gene RNA polymerase II, I and III subunit F Neighboring gene SRY-box transcription factor 10

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General protein information

    Preferred Names
    UPF0193 protein EVG1
    Names
    Mus EST J0827E04

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001007708.1NP_001007709.1  UPF0193 protein EVG1

      See identical proteins and their annotated locations for NP_001007709.1

      Status: PROVISIONAL

      Source sequence(s)
      BC079039
      UniProtKB/TrEMBL
      A0A8I6AAJ3, Q6AYH8
      Related
      ENSRNOP00000088958.1, ENSRNOT00000105348.2
      Conserved Domains (1) summary
      pfam05250
      Location:6213
      UPF0193; Uncharacterized protein family (UPF0193)

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086025.1 Reference GRCr8

      Range
      112585341..112592938 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006241992.4XP_006242054.1  UPF0193 protein EVG1 isoform X1

      See identical proteins and their annotated locations for XP_006242054.1

      UniProtKB/TrEMBL
      A0A8I6AAJ3, A6HSP8, F7FLU1
      Related
      ENSRNOP00000014878.4, ENSRNOT00000014878.7
      Conserved Domains (1) summary
      pfam05250
      Location:10215
      UPF0193; uncharacterized protein family (UPF0193)