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    Czib CXXC motif containing zinc binding protein [ Rattus norvegicus (Norway rat) ]

    Gene ID: 298384, updated on 9-Dec-2024

    Summary

    Official Symbol
    Czibprovided by RGD
    Official Full Name
    CXXC motif containing zinc binding proteinprovided by RGD
    Primary source
    RGD:1559786
    See related
    EnsemblRapid:ENSRNOG00000012724 AllianceGenome:RGD:1559786
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1559786
    Summary
    Predicted to enable zinc ion binding activity. Orthologous to human CZIB (CXXC motif containing zinc binding protein). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Heart (RPKM 81.4), Adrenal (RPKM 74.4) and 9 other tissues See more
    Orthologs
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    Genomic context

    See Czib in Genome Data Viewer
    Location:
    5q34
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 5 NC_086023.1 (127875408..127885100)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 5 NC_051340.1 (122648333..122657767)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (127489349..127498734)

    Chromosome 5 - NC_086023.1Genomic Context describing neighboring genes Neighboring gene U7 small nuclear RNA Neighboring gene LDL receptor related protein 8 Neighboring gene mago homolog, exon junction complex subunit Neighboring gene carnitine palmitoyltransferase 2 Neighboring gene uncharacterized LOC134486962 Neighboring gene zinc finger CCCH-type containing, antiviral 1, pseudogene 9

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General gene information

    Clone Names

    • MGC112851

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables zinc ion binding  
    enables zinc ion binding  
    enables zinc ion binding  
    enables zinc ion binding  

    General protein information

    Preferred Names
    CXXC motif containing zinc binding protein
    Names
    UPF0587 protein C1orf123 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001034132.1NP_001029304.1  CXXC motif containing zinc binding protein

      See identical proteins and their annotated locations for NP_001029304.1

      Status: PROVISIONAL

      Source sequence(s)
      BC100100
      UniProtKB/Swiss-Prot
      Q498R7
      UniProtKB/TrEMBL
      A0A8I6A651, A6JYT0
      Related
      ENSRNOP00000058861.2, ENSRNOT00000065275.3
      Conserved Domains (1) summary
      pfam05907
      Location:6157
      DUF866; Eukaryotic protein of unknown function (DUF866)

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086023.1 Reference GRCr8

      Range
      127875408..127885100
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063287396.1XP_063143466.1  CXXC motif containing zinc binding protein isoform X1

      UniProtKB/TrEMBL
      A0A8I6A5J0
      Related
      ENSRNOP00000086541.1, ENSRNOT00000104267.2
    2. XM_008763867.3XP_008762089.1  CXXC motif containing zinc binding protein isoform X2

      UniProtKB/TrEMBL
      A0A8I6AR96
      Related
      ENSRNOP00000076666.2, ENSRNOT00000117405.2
      Conserved Domains (1) summary
      pfam05907
      Location:18143
      DUF866; Eukaryotic protein of unknown function (DUF866)
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