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    Nkain1 Sodium/potassium transporting ATPase interacting 1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 500557, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Nkain1provided by RGD
    Official Full Name
    Sodium/potassium transporting ATPase interacting 1provided by RGD
    Primary source
    RGD:1561205
    See related
    EnsemblRapid:ENSRNOG00000011445 AllianceGenome:RGD:1561205
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1561205
    Summary
    Predicted to enable ATPase binding activity. Predicted to be involved in regulation of sodium ion transport. Predicted to be located in plasma membrane. Orthologous to human NKAIN1 (sodium/potassium transporting ATPase interacting 1). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Brain (RPKM 81.2), Heart (RPKM 61.1) and 8 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Nkain1 in Genome Data Viewer
    Location:
    5q36
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 5 NC_086023.1 (148031685..148076834)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 5 NC_051340.1 (142747702..142792665)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (148635537..148669709)

    Chromosome 5 - NC_086023.1Genomic Context describing neighboring genes Neighboring gene small nuclear ribonucleoprotein U5 subunit 40 Neighboring gene ribosomal protein L10, pseudogene 6 Neighboring gene uncharacterized LOC134479033 Neighboring gene pumilio RNA-binding family member 1 Neighboring gene small nucleolar RNA SNORD103/SNORD85 Neighboring gene small nucleolar RNA SNORD103/SNORD85

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A novel family of transmembrane proteins interacting with beta subunits of the Na,K-ATPase. Gorokhova S, et al. Hum Mol Genet, 2007 Oct 15. PMID 17606467
    2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables ATPase binding ISO
    Inferred from Sequence Orthology
    more info
    		  
    Process Evidence Code Pubs
    involved_in regulation of sodium ion transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    located_in plasma membrane ISO
    Inferred from Sequence Orthology
    more info
    		  

    General protein information

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    Preferred Names
    sodium/potassium-transporting ATPase subunit beta-1-interacting protein 1
    Names
    Na+/K+ transporting ATPase interacting 1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001427136.1 → NP_001414065.1  sodium/potassium-transporting ATPase subunit beta-1-interacting protein 1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000005
      Related
      ENSRNOP00000099476.1, ENSRNOT00000148373.1

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086023.1 Reference GRCr8

      Range
      148031685..148076834
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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