Rnf39 ring finger protein 39 [Rattus norvegicus (Norway rat)] - Gene

Summary

Official Symbol: Rnf39provided by RGD
Official Full Name: ring finger protein 39provided by RGD
Primary source: RGD:628854
See related: AllianceGenome:RGD:628854
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as: Lirf; Hzfw1
Summary: Predicted to enable ubiquitin protein ligase activity. Predicted to be involved in innate immune response. Predicted to be active in cytoplasm. Orthologous to human RNF39 (ring finger protein 39). [provided by Alliance of Genome Resources, Dec 2024]
Expression: Biased expression in Lung (RPKM 51.3), Liver (RPKM 37.6) and 9 other tissues See more
Orthologs: human mouse all
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Genomic context

Location:: 20p12

Exon count:: 4

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	20	NC_086038.1 (1610027..1615516, complement)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	20	NC_051355.1 (1604794..1610283, complement)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	20	NC_005119.4 (2098375..2103864, complement)

Chromosome 20 - NC_086038.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

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Markers

RH131842 (e-PCR)
- UniSTS:215125

RH131374 (e-PCR)
- UniSTS:214657

Gene Ontology Provided by RGD

Function	Evidence Code	Pubs
enables metal ion binding	IEA Inferred from Electronic Annotation more info
enables ubiquitin protein ligase activity	IBA Inferred from Biological aspect of Ancestor more info

Process	Evidence Code	Pubs
involved_in innate immune response	IBA Inferred from Biological aspect of Ancestor more info
involved_in regulation of neuronal synaptic plasticity	NAS Non-traceable Author Statement more info	PubMed

Component	Evidence Code	Pubs
is_active_in cytoplasm	IBA Inferred from Biological aspect of Ancestor more info

General protein information

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Preferred Names: RING finger protein 39

Names: LTP-induced RING finger protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_134374.2 → NP_599201.1 RING finger protein 39

See identical proteins and their annotated locations for NP_599201.1

Status: VALIDATED

Source sequence(s)

BX883051

UniProtKB/Swiss-Prot

Q920M2

UniProtKB/TrEMBL

A0A8I6ASY8, A6KR81

Conserved Domains (4) summary

TIGR00599
Location:14 → 205

rad18; DNA repair protein rad18

cd00162
Location:20 → 66

RING_Ubox; RING-HC finger (C3HC4-type) [structural motif]

cl02614
Location:161 → 347

SPRY; SPRY domain

cl17238
Location:18 → 66

RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain