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    Rup2 urinary protein 2 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 619560, updated on 9-Dec-2024

    Summary

    Symbol
    Rup2provided by RGD
    Full Name
    urinary protein 2provided by RGD
    Primary source
    RGD:1561250
    See related
    EnsemblRapid:ENSRNOG00000084687 AllianceGenome:RGD:1561250
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    UP-1
    Summary
    Predicted to be located in extracellular region. [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Restricted expression toward (RPKM 33251.1) See more
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    Genomic context

    See Rup2 in Genome Data Viewer
    Location:
    8q21
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 8 NC_086026.1 (43547875..43551456, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 8 NC_051343.1 (35336764..35340345, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 8 NC_005107.4 (41657662..41661223)

    Chromosome 8 - NC_086026.1Genomic Context describing neighboring genes Neighboring gene PDZ domain containing 4, pseudogene 3 Neighboring gene U6 spliceosomal RNA Neighboring gene PDZ domain-containing protein 4-like Neighboring gene igE-binding protein-like

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General gene information

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    located_in extracellular region  

    General protein information

    Preferred Names
    urinary protein 1
    Names
    RUP-1
    liver regeneration-related protein LRRG05

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001034950.4NP_001030122.2  urinary protein 1 precursor

      See identical proteins and their annotated locations for NP_001030122.2

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000008
      UniProtKB/Swiss-Prot
      P81827, Q53ZD7
      UniProtKB/TrEMBL
      H8Y6J4
      Related
      ENSRNOP00000065475.4, ENSRNOT00000072224.4

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086026.1 Reference GRCr8

      Range
      43547875..43551456 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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