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    Ccdc180 coiled-coil domain containing 180 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 100910460, updated on 9-Dec-2024

    Summary

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    Official Symbol
    Ccdc180provided by RGD
    Official Full Name
    coiled-coil domain containing 180provided by RGD
    Primary source
    RGD:6498132
    See related
    EnsemblRapid:ENSRNOG00000010412 AllianceGenome:RGD:6498132
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Orthologous to human CCDC180 (coiled-coil domain containing 180). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Testes (RPKM 49.7), Lung (RPKM 16.8) and 2 other tissues See more
    Orthologs
    human mouse all
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    Genomic context

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    See Ccdc180 in Genome Data Viewer
    Location:
    5q22
    Exon count:
    37
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 5 NC_086023.1 (64950522..65019127)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 5 NC_051340.1 (60154883..60223508)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (61467799..61542675)

    Chromosome 5 - NC_086023.1Genomic Context describing neighboring genes Neighboring gene insulin-like growth factor binding protein-like 1 Neighboring gene STRA6-like Neighboring gene uncharacterized LOC120102865 Neighboring gene uncharacterized LOC120102866 Neighboring gene tudor domain containing 7 Neighboring gene tropomodulin 1 Neighboring gene thiosulfate sulfurtransferase like domain containing 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

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    Related articles in PubMed

    1. Large-scale proteomics and phosphoproteomics of urinary exosomes. Gonzales PA, et al. J Am Soc Nephrol, 2009 Feb. PMID 19056867, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    coiled-coil domain-containing protein 180

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001427684.1 → NP_001414613.1  coiled-coil domain-containing protein 180

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000005
      UniProtKB/TrEMBL
      F1LXD9
      Related
      ENSRNOP00000013930.8, ENSRNOT00000013930.8

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086023.1 Reference GRCr8

      Range
      64950522..65019127
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017593913.3 → XP_017449402.2  coiled-coil domain-containing protein 180 isoform X1

      UniProtKB/TrEMBL
      F1LXD9
      Conserved Domains (2) summary
      pfam14643
      Location:128 → 596
      DUF4455; Domain of unknown function (DUF4455)
      pfam14644
      Location:1349 → 1553
      DUF4456; Domain of unknown function (DUF4456)

    2. XM_063287055.1 → XP_063143125.1  coiled-coil domain-containing protein 180 isoform X2

      UniProtKB/TrEMBL
      F1LXD9
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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    Chemical Information
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    Research Materials