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    LOC732556 SEL-1 [ Glycine max (soybean) ]

    Gene ID: 732556, updated on 3-Feb-2025

    Summary

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    Gene symbol
    LOC732556
    Gene description
    SEL-1
    Locus tag
    GLYMA_05G246700v4
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Glycine max
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
    Also known as
    Gm sel-1
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    Genomic context

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    See LOC732556 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2025_01 current Glycine_max_v4.0 (GCF_000004515.6) 5 NC_038241.2 (42058458..42061568, complement)
    103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 5 NC_038241.1 (42018724..42021770, complement)

    Chromosome 5 - NC_038241.2Genomic Context describing neighboring genes Neighboring gene phosphoethanolamine N-methyltransferase Neighboring gene protection of telomeres protein 1b-like Neighboring gene small nucleolar RNA snoR113 Neighboring gene uncharacterized LOC100820022 Neighboring gene uncharacterized LOC100306671

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Gene expression in response to endoplasmic reticulum stress in Arabidopsis thaliana. Kamauchi S, et al. FEBS J, 2005 Jul. PMID 15978049
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    SEL-1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001249985.2 → NP_001236914.1  SEL-1 precursor

      See identical proteins and their annotated locations for NP_001236914.1

      Status: PROVISIONAL

      Source sequence(s)
      AB197676
      UniProtKB/TrEMBL
      Q4R1J3
      Conserved Domains (4) summary
      smart00671
      Location:537 → 567
      SEL1; Sel1-like repeats
      COG0790
      Location:223 → 469
      TPR; TPR repeat [Signal transduction mechanisms]
      sd00010
      Location:259 → 288
      SLR; SLR repeat [structural motif]
      pfam08238
      Location:239 → 274
      Sel1; Sel1 repeat

    RefSeqs of Annotated Genomes: GCF_000004515.6-RS_2025_01

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Glycine_max_v4.0 Primary Assembly

    Genomic

    1. NC_038241.2 Reference Glycine_max_v4.0 Primary Assembly

      Range
      42058458..42061568 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_041015250.1 → XP_040871184.1  SEL-1 isoform X1

      UniProtKB/TrEMBL
      I1K5B4
      Conserved Domains (3) summary
      smart00671
      Location:584 → 614
      SEL1; Sel1-like repeats
      COG0790
      Location:233 → 479
      TPR; TPR repeat [Signal transduction mechanisms]
      sd00010
      Location:269 → 298
      SLR; SLR repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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