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    LOC100781928 glyoxylate/succinic semialdehyde reductase 2, chloroplastic [ Glycine max (soybean) ]

    Gene ID: 100781928, updated on 11-Apr-2024

    Summary

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    Gene symbol
    LOC100781928
    Gene description
    glyoxylate/succinic semialdehyde reductase 2, chloroplastic
    Locus tag
    GLYMA_13G349100v4
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Glycine max
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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    Genomic context

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    See LOC100781928 in Genome Data Viewer
    Location:
    chromosome: 13
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    104 current Glycine_max_v4.0 (GCF_000004515.6) 13 NC_038249.2 (43269594..43273123)
    103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 13 NC_038249.1 (43889419..43892933)

    Chromosome 13 - NC_038249.2Genomic Context describing neighboring genes Neighboring gene heterogeneous nuclear ribonucleoprotein 1 Neighboring gene uncharacterized LOC106794279 Neighboring gene disease resistance-like protein DSC1 Neighboring gene nucleosome assembly protein 1;4-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables NAD binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables NADP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables glyoxylate reductase (NADPH) activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    glyoxylate/succinic semialdehyde reductase 2, chloroplastic

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Glycine_max_v4.0 Primary Assembly

    Genomic

    1. NC_038249.2 Reference Glycine_max_v4.0 Primary Assembly

      Range
      43269594..43273123
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_003543540.4 → XP_003543588.1  glyoxylate/succinic semialdehyde reductase 2, chloroplastic

      See identical proteins and their annotated locations for XP_003543588.1

      UniProtKB/TrEMBL
      K7M3M7
      Conserved Domains (1) summary
      COG2084
      Location:40 → 324
      MmsB; 3-hydroxyisobutyrate dehydrogenase or related beta-hydroxyacid dehydrogenase [Lipid transport and metabolism]
    Nucleotide Protein
    Heading Accession and Version

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