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    LOC100526992 elongator complex protein [ Glycine max (soybean) ]

    Gene ID: 100526992, updated on 3-Feb-2025

    Summary

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    Gene symbol
    LOC100526992
    Gene description
    elongator complex protein
    Locus tag
    GLYMA_10G289800v4
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Glycine max
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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    Genomic context

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    See LOC100526992 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2025_01 current Glycine_max_v4.0 (GCF_000004515.6) 10 NC_038246.2 (50883131..50888711)
    103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 10 NC_038246.1 (50811301..50816881)

    Chromosome 10 - NC_038246.2Genomic Context describing neighboring genes Neighboring gene methionine--tRNA ligase, chloroplastic/mitochondrial Neighboring gene uncharacterized LOC100813752 Neighboring gene WUSCHEL-related homeobox 13 Neighboring gene Rab GTPase family protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables tRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in tRNA wobble base 5-methoxycarbonylmethyl-2-thiouridinylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of elongator holoenzyme complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    elongator complex protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001250049.2 → NP_001236978.2  elongator complex protein

      Status: VALIDATED

      Source sequence(s)
      ACUP04003780
      UniProtKB/TrEMBL
      I1LFC4
      Conserved Domains (2) summary
      sd00039
      Location:33 → 73
      7WD40; WD40 repeat [structural motif]
      cl27115
      Location:1 → 948
      IKI3; IKI3 family

    RefSeqs of Annotated Genomes: GCF_000004515.6-RS_2025_01

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Glycine_max_v4.0 Primary Assembly

    Genomic

    1. NC_038246.2 Reference Glycine_max_v4.0 Primary Assembly

      Range
      50883131..50888711
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006588344.4 → XP_006588407.1  elongator complex protein isoform X1

      Conserved Domains (1) summary
      cl27115
      Location:12 → 763
      IKI3; IKI3 family
    Nucleotide Protein
    Heading Accession and Version

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