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    LOC100306124 uncharacterized LOC100306124 [ Glycine max (soybean) ]

    Gene ID: 100306124, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC100306124
    Gene description
    uncharacterized LOC100306124
    Locus tag
    GLYMA_20G238600v4
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Glycine max
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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    Genomic context

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    See LOC100306124 in Genome Data Viewer
    Location:
    chromosome: 20
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    104 current Glycine_max_v4.0 (GCF_000004515.6) 20 NC_038256.2 (46969108..46972124)
    103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 20 NC_038256.1 (47029793..47032847)

    Chromosome 20 - NC_038256.2Genomic Context describing neighboring genes Neighboring gene pre-mRNA-splicing factor 38 Neighboring gene transfer RNA proline (anticodon AGG) Neighboring gene probable protein phosphatase 2C 5 Neighboring gene uncharacterized LOC100797448

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables single-stranded DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in mitochondrial DNA replication IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in positive regulation of helicase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in mitochondrial nucleoid IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Single-stranded DNA-binding protein, mitochondrial-like; uncharacterized protein LOC100306124

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001250998.2 → NP_001237927.1  Single-stranded DNA-binding protein, mitochondrial-like

      See identical proteins and their annotated locations for NP_001237927.1

      Status: PROVISIONAL

      Source sequence(s)
      BT090080
      UniProtKB/TrEMBL
      C6SY33
      Conserved Domains (1) summary
      pfam00436
      Location:86 → 190
      SSB; Single-strand binding protein family

    RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Glycine_max_v4.0 Primary Assembly

    Genomic

    1. NC_038256.2 Reference Glycine_max_v4.0 Primary Assembly

      Range
      46969108..46972124
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_041013022.1 → XP_040868956.1  uncharacterized protein LOC100306124 isoform X3

    2. XM_041013020.1 → XP_040868954.1  uncharacterized protein LOC100306124 isoform X1

      UniProtKB/TrEMBL
      K7N5B5
      Conserved Domains (1) summary
      pfam00436
      Location:86 → 190
      SSB; Single-strand binding protein family

    3. XM_006605232.3 → XP_006605295.1  uncharacterized protein LOC100306124 isoform X2

      See identical proteins and their annotated locations for XP_006605295.1

      UniProtKB/TrEMBL
      I1NJ41
      Conserved Domains (1) summary
      pfam00436
      Location:86 → 190
      SSB; Single-strand binding protein family

    4. XM_041013021.1 → XP_040868955.1  uncharacterized protein LOC100306124 isoform X1

      UniProtKB/TrEMBL
      K7N5B5
      Conserved Domains (1) summary
      pfam00436
      Location:86 → 190
      SSB; Single-strand binding protein family
    Nucleotide Protein
    Heading Accession and Version

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