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    LOC100788486 26S proteasome regulatory subunit 6A homolog [ Glycine max (soybean) ]

    Gene ID: 100788486, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC100788486
    Gene description
    26S proteasome regulatory subunit 6A homolog
    Locus tag
    GLYMA_20G236500v4
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Glycine max
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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    Genomic context

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    See LOC100788486 in Genome Data Viewer
    Location:
    chromosome: 20
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    104 current Glycine_max_v4.0 (GCF_000004515.6) 20 NC_038256.2 (46818548..46822222)
    103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 20 NC_038256.1 (46879496..46883237)

    Chromosome 20 - NC_038256.2Genomic Context describing neighboring genes Neighboring gene protein RALF-like 33 Neighboring gene uncharacterized LOC121174325 Neighboring gene translationally-controlled tumor protein homolog Neighboring gene E3 ubiquitin-protein ligase RFI2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables proteasome-activating activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in proteasome-mediated ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of proteasome regulatory particle, base subcomplex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    26S proteasome regulatory subunit 6A homolog
    Names
    26S protease regulatory subunit 6A homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Glycine_max_v4.0 Primary Assembly

    Genomic

    1. NC_038256.2 Reference Glycine_max_v4.0 Primary Assembly

      Range
      46818548..46822222
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006606469.4 → XP_006606532.1  26S proteasome regulatory subunit 6A homolog

      See identical proteins and their annotated locations for XP_006606532.1

      UniProtKB/TrEMBL
      A0A0R0ERR0, C6TAN1
      Conserved Domains (1) summary
      COG1222
      Location:28 → 416
      RPT1; ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
    Nucleotide Protein
    Heading Accession and Version

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    Other Literature Sources
    Molecular Biology Databases