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    LOC100527653 uncharacterized LOC100527653 [ Glycine max (soybean) ]

    Gene ID: 100527653, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC100527653
    Gene description
    uncharacterized LOC100527653
    Locus tag
    GLYMA_03G203800v4
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Glycine max
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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    Genomic context

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    See LOC100527653 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    104 current Glycine_max_v4.0 (GCF_000004515.6) 3 NC_016090.4 (42378295..42381100)
    103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 3 NC_016090.3 (41210340..41213129)

    Chromosome 3 - NC_016090.4Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC100812878 Neighboring gene ubiquitin carboxyl-terminal hydrolase 8 Neighboring gene uncharacterized LOC100813944 Neighboring gene uncharacterized LOC100526913

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables dihydroneopterin aldolase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in folic acid-containing compound metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    Dihydroneopterin aldolase 2-like; uncharacterized protein LOC100527653

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001248575.2 → NP_001235504.1  Dihydroneopterin aldolase 2-like

      See identical proteins and their annotated locations for NP_001235504.1

      Status: PROVISIONAL

      Source sequence(s)
      BT092513
      UniProtKB/TrEMBL
      C6T502
      Conserved Domains (1) summary
      pfam02152
      Location:14 → 123
      FolB; Dihydroneopterin aldolase

    RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Glycine_max_v4.0 Primary Assembly

    Genomic

    1. NC_016090.4 Reference Glycine_max_v4.0 Primary Assembly

      Range
      42378295..42381100
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006576143.4 → XP_006576206.1  uncharacterized protein LOC100527653 isoform X1

      See identical proteins and their annotated locations for XP_006576206.1

      UniProtKB/TrEMBL
      C6T502
      Conserved Domains (1) summary
      pfam02152
      Location:14 → 123
      FolB; Dihydroneopterin aldolase

    2. XM_041013775.1 → XP_040869709.1  uncharacterized protein LOC100527653 isoform X1

      UniProtKB/TrEMBL
      C6T502
      Conserved Domains (1) summary
      pfam02152
      Location:14 → 123
      FolB; Dihydroneopterin aldolase

    3. XM_006576144.4 → XP_006576207.1  uncharacterized protein LOC100527653 isoform X1

      See identical proteins and their annotated locations for XP_006576207.1

      UniProtKB/TrEMBL
      C6T502
      Conserved Domains (1) summary
      pfam02152
      Location:14 → 123
      FolB; Dihydroneopterin aldolase
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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    Other Literature Sources
    Molecular Biology Databases