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    LOC100499957 uncharacterized LOC100499957 [ Glycine max (soybean) ]

    Gene ID: 100499957, updated on 3-Feb-2025

    Summary

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    Gene symbol
    LOC100499957
    Gene description
    uncharacterized LOC100499957
    Locus tag
    GLYMA_06G047000v4
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Glycine max
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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    Genomic context

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    See LOC100499957 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2025_01 current Glycine_max_v4.0 (GCF_000004515.6) 6 NC_038242.2 (3531133..3533303)
    103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 6 NC_038242.1 (3545069..3547239)

    Chromosome 6 - NC_038242.2Genomic Context describing neighboring genes Neighboring gene GPN-loop GTPase QQT1 Neighboring gene transfer RNA proline (anticodon UGG) Neighboring gene putative nucleobase-ascorbate transporter 10 Neighboring gene heptahelical transmembrane protein ADIPOR3

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables actin filament binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in actin filament bundle assembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in actin cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    LIM domain-containing protein WLIM1-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001251651.2 → NP_001238580.1  LIM domain-containing protein WLIM1-like

      See identical proteins and their annotated locations for NP_001238580.1

      Status: PROVISIONAL

      Source sequence(s)
      BT090260
      UniProtKB/TrEMBL
      C6SYL2
      Conserved Domains (2) summary
      cd09440
      Location:6 → 68
      LIM1_SF3; The first Lim domain of pollen specific protein SF3
      cd09441
      Location:109 → 169
      LIM2_SF3; The second Lim domain of pollen specific protein SF3

    RefSeqs of Annotated Genomes: GCF_000004515.6-RS_2025_01

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Glycine_max_v4.0 Primary Assembly

    Genomic

    1. NC_038242.2 Reference Glycine_max_v4.0 Primary Assembly

      Range
      3531133..3533303
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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