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    LOC100778287 cullin-1 [ Glycine max (soybean) ]

    Gene ID: 100778287, updated on 7-Dec-2023

    Summary

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    Gene symbol
    LOC100778287
    Gene description
    cullin-1
    Locus tag
    GLYMA_03G211400v4
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Glycine max
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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    Genomic context

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    See LOC100778287 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    22
    Annotation release Status Assembly Chr Location
    104 current Glycine_max_v4.0 (GCF_000004515.6) 3 NC_016090.4 (42920430..42926447, complement)
    103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 3 NC_016090.3 (41756742..41762766, complement)

    Chromosome 3 - NC_016090.4Genomic Context describing neighboring genes Neighboring gene peroxisome biogenesis protein 6-like Neighboring gene cysteine-tryptophan domain-containing zinc finger protein 3 Neighboring gene homeobox protein LUMINIDEPENDENS Neighboring gene small nucleolar RNA R41

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ubiquitin protein ligase binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein ubiquitination IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in ubiquitin-dependent protein catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of cullin-RING ubiquitin ligase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cullin-1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Glycine max Annotation Release 104 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Glycine_max_v4.0 Primary Assembly

    Genomic

    1. NC_016090.4 Reference Glycine_max_v4.0 Primary Assembly

      Range
      42920430..42926447 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006577072.4 → XP_006577135.1  cullin-1 isoform X2

      See identical proteins and their annotated locations for XP_006577135.1

      UniProtKB/TrEMBL
      K7KG95
      Conserved Domains (2) summary
      pfam00888
      Location:12 → 641
      Cullin; Cullin family
      pfam10557
      Location:668 → 729
      Cullin_Nedd8; Cullin protein neddylation domain

    2. XM_006577073.4 → XP_006577136.1  cullin-1 isoform X2

      See identical proteins and their annotated locations for XP_006577136.1

      UniProtKB/TrEMBL
      K7KG95
      Conserved Domains (2) summary
      pfam00888
      Location:12 → 641
      Cullin; Cullin family
      pfam10557
      Location:668 → 729
      Cullin_Nedd8; Cullin protein neddylation domain

    3. XM_006577071.4 → XP_006577134.1  cullin-1 isoform X2

      See identical proteins and their annotated locations for XP_006577134.1

      UniProtKB/TrEMBL
      K7KG95
      Conserved Domains (2) summary
      pfam00888
      Location:12 → 641
      Cullin; Cullin family
      pfam10557
      Location:668 → 729
      Cullin_Nedd8; Cullin protein neddylation domain

    4. XM_041014173.1 → XP_040870107.1  cullin-1 isoform X1

      UniProtKB/TrEMBL
      K7KG94
      Conserved Domains (2) summary
      pfam00888
      Location:15 → 644
      Cullin; Cullin family
      pfam10557
      Location:671 → 732
      Cullin_Nedd8; Cullin protein neddylation domain

    5. XM_014773946.3 → XP_014629432.1  cullin-1 isoform X1

      UniProtKB/TrEMBL
      K7KG94
      Conserved Domains (2) summary
      pfam00888
      Location:15 → 644
      Cullin; Cullin family
      pfam10557
      Location:671 → 732
      Cullin_Nedd8; Cullin protein neddylation domain
    Nucleotide Protein
    Heading Accession and Version

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