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    LOC100808748 rac-like GTP-binding protein ARAC1-like [ Glycine max (soybean) ]

    Gene ID: 100808748, updated on 3-Feb-2025

    Summary

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    Gene symbol
    LOC100808748
    Gene description
    rac-like GTP-binding protein ARAC1-like
    Locus tag
    GLYMA_11G079100v4
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Glycine max
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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    Genomic context

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    See LOC100808748 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2025_01 current Glycine_max_v4.0 (GCF_000004515.6) 11 NC_038247.2 (5935485..5938029)
    103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 11 NC_038247.1 (5942893..5945537)

    Chromosome 11 - NC_038247.2Genomic Context describing neighboring genes Neighboring gene pentatricopeptide repeat-containing protein At1g80550, mitochondrial Neighboring gene uncharacterized LOC100809148 Neighboring gene 3-isopropylmalate dehydrogenase 2, chloroplastic Neighboring gene vacuolar protein sorting-associated protein 35A Neighboring gene heavy metal-associated isoprenylated plant protein 27

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables GTP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables GTPase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein kinase binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in actin filament organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in cortical cytoskeleton organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in establishment or maintenance of cell polarity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of actin cytoskeleton organization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of cell shape IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in small GTPase-mediated signal transduction IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cell cortex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cell projection IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytoplasmic vesicle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in cytoskeleton IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    rac-like GTP-binding protein ARAC1-like
    Names
    rac-like GTP-binding protein RHO1-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001252934.2 → NP_001239863.1  rac-like GTP-binding protein ARAC1-like

      See identical proteins and their annotated locations for NP_001239863.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longer transcript. Both variants 1 and 2 encode the same protein.
      Source sequence(s)
      ACUP04003803
      UniProtKB/TrEMBL
      C6SW12, C6TCP3
      Conserved Domains (1) summary
      cd04133
      Location:6 → 178
      Rop_like; Rho-related protein from plants (Rop)-like

    2. NM_001367288.1 → NP_001354217.1  rac-like GTP-binding protein ARAC1-like

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Both variants 1 and 2 encode the same protein.
      Source sequence(s)
      ACUP04003803, BM892571, FG997036
      UniProtKB/TrEMBL
      C6SW12, C6TCP3
      Conserved Domains (1) summary
      cd04133
      Location:6 → 178
      Rop_like; Rho-related protein from plants (Rop)-like

    RefSeqs of Annotated Genomes: GCF_000004515.6-RS_2025_01

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Glycine_max_v4.0 Primary Assembly

    Genomic

    1. NC_038247.2 Reference Glycine_max_v4.0 Primary Assembly

      Range
      5935485..5938029
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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