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    LOC100796579 novel plant SNARE 11-like [ Glycine max (soybean) ]

    Gene ID: 100796579, updated on 3-Feb-2025

    Summary

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    Gene symbol
    LOC100796579
    Gene description
    novel plant SNARE 11-like
    Locus tag
    GLYMA_05G067700v4
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Glycine max
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade; NPAAA clade; indigoferoid/millettioid clade; Phaseoleae; Glycine; Glycine subgen. Soja
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    Genomic context

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    See LOC100796579 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2025_01 current Glycine_max_v4.0 (GCF_000004515.6) 5 NC_038241.2 (6959522..6968394)
    103 previous assembly Glycine_max_v2.1 (GCF_000004515.5) 5 NC_038241.1 (6838336..6846733)

    Chromosome 5 - NC_038241.2Genomic Context describing neighboring genes Neighboring gene actin-46 Neighboring gene uncharacterized LOC106798712 Neighboring gene uncharacterized LOC113001647 Neighboring gene uncharacterized LOC102664891 Neighboring gene NAK-type protein kinase Neighboring gene protein MAIN-LIKE 2-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables SNAP receptor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables SNARE binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in vesicle fusion IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in ER to Golgi transport vesicle membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in Golgi apparatus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of SNARE complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in endoplasmic reticulum membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in late endosome membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    novel plant SNARE 11-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001319728.2 → NP_001306657.1  novel plant SNARE 11-like

      Status: VALIDATED

      Source sequence(s)
      AI856526, CX704965, FG994377, GJUV01026570, GJUV01026571
      UniProtKB/TrEMBL
      C6TBN8
      Conserved Domains (2) summary
      COG5325
      Location:3 → 220
      COG5325; t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
      cd15861
      Location:139 → 203
      SNARE_SNAP25N_23N_29N_SEC9N; N-terminal SNARE motif of SNAP25, SNAP23, SNAP29, and SEC9

    RNA

    1. NR_183196.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AI856526, CX548657, FG994377, GJUV01026570, GJUV01026571

    2. NR_183197.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AI856526, FG994377, GJUV01026570, GJUV01026571

    RefSeqs of Annotated Genomes: GCF_000004515.6-RS_2025_01

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Glycine_max_v4.0 Primary Assembly

    Genomic

    1. NC_038241.2 Reference Glycine_max_v4.0 Primary Assembly

      Range
      6959522..6968394
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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