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    Mrps23 mitochondrial ribosomal protein S23 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 360594, updated on 9-Dec-2024

    Summary

    Official Symbol
    Mrps23provided by RGD
    Official Full Name
    mitochondrial ribosomal protein S23provided by RGD
    Primary source
    RGD:1306963
    See related
    EnsemblRapid:ENSRNOG00000010363 AllianceGenome:RGD:1306963
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to be a structural constituent of ribosome. Predicted to be involved in translation. Predicted to be located in nuclear membrane. Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in combined oxidative phosphorylation deficiency 46. Orthologous to human MRPS23 (mitochondrial ribosomal protein S23). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Heart (RPKM 266.8), Adrenal (RPKM 180.7) and 9 other tissues See more
    Orthologs
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    Genomic context

    See Mrps23 in Genome Data Viewer
    Location:
    10q26
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 10 NC_086028.1 (73494417..73503996)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 10 NC_051345.1 (72999033..73006791)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 10 NC_005109.4 (75527265..75536767)

    Chromosome 10 - NC_086028.1Genomic Context describing neighboring genes Neighboring gene serine and arginine rich splicing factor 1 Neighboring gene vascular endothelial zinc finger 1 Neighboring gene CUE domain containing 1 Neighboring gene ribosomal protein L27a, pseudogene 10 Neighboring gene uncharacterized LOC102557529 Neighboring gene coiled-coil domain containing 182

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General gene information

    Gene Ontology Provided by RGD

    Process Evidence Code Pubs
    involved_in translation  
    Component Evidence Code Pubs
    is_active_in mitochondrion  
    located_in mitochondrion  
    located_in nuclear membrane  
    located_in nuclear membrane  
    located_in ribosome  

    General protein information

    Preferred Names
    small ribosomal subunit protein mS23
    Names
    28S ribosomal protein S23, mitochondrial

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001108289.1NP_001101759.1  small ribosomal subunit protein mS23

      See identical proteins and their annotated locations for NP_001101759.1

      Status: PROVISIONAL

      Source sequence(s)
      CH473948
      UniProtKB/TrEMBL
      A6HHX7, A6HHX8, D3ZIN7
      Related
      ENSRNOP00000013771.4, ENSRNOT00000013771.8
      Conserved Domains (1) summary
      pfam10484
      Location:2128
      MRP-S23; Mitochondrial ribosomal protein S23

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086028.1 Reference GRCr8

      Range
      73494417..73503996
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063269401.1XP_063125471.1  small ribosomal subunit protein mS23 isoform X1

      UniProtKB/TrEMBL
      A6HHX7, A6HHX8, D3ZIN7
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