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    Rimkla ribosomal modification protein rimK-like family member A [ Rattus norvegicus (Norway rat) ]

    Gene ID: 313553, updated on 9-Dec-2024

    Summary

    Official Symbol
    Rimklaprovided by RGD
    Official Full Name
    ribosomal modification protein rimK-like family member Aprovided by RGD
    Primary source
    RGD:1306880
    See related
    EnsemblRapid:ENSRNOG00000008625 AllianceGenome:RGD:1306880
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1306880
    Summary
    Predicted to enable N-acetyl-L-aspartate-L-glutamate ligase activity. Predicted to be involved in protein modification process. Predicted to be located in cytoplasm. Orthologous to human RIMKLA (ribosomal modification protein rimK like family member A). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Brain (RPKM 71.3), Heart (RPKM 15.8) and 7 other tissues See more
    Orthologs
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    Genomic context

    See Rimkla in Genome Data Viewer
    Location:
    5q36
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 5 NC_086023.1 (138357463..138384132, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 5 NC_051340.1 (133072179..133098840, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (138518559..138545577, complement)

    Chromosome 5 - NC_086023.1Genomic Context describing neighboring genes Neighboring gene zinc finger, MYND-type containing 12 Neighboring gene phosphopantothenoylcysteine synthetase Neighboring gene forkhead box J3 Neighboring gene ribosomal protein S27a, pseudogene 1 Neighboring gene ubiquitin-like FUBI-ribosomal protein eS30 fusion protein

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General gene information

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables ATP binding  
    enables N-acetyl-L-aspartate-L-glutamate ligase activity  
    enables N-acetyl-L-aspartate-L-glutamate ligase activity  
    enables metal ion binding  
    Component Evidence Code Pubs
    is_active_in cytoplasm  
    located_in cytoplasm  

    General protein information

    Preferred Names
    LOW QUALITY PROTEIN: N-acetylaspartylglutamate synthase A
    Names
    N-acetylaspartylglutamate synthase A

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086023.1 Reference GRCr8

      Range
      138357463..138384132 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_056985553.2XP_056841533.1  LOW QUALITY PROTEIN: N-acetylaspartylglutamate synthase A

      UniProtKB/TrEMBL
      A6JZP4, D4A7C3
      Related
      ENSRNOP00000011586.5, ENSRNOT00000011586.8
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