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    Fam8a1 family with sequence similarity 8, member A1 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 291031, updated on 9-Dec-2024

    Summary

    Official Symbol
    Fam8a1provided by RGD
    Official Full Name
    family with sequence similarity 8, member A1provided by RGD
    Primary source
    RGD:1307845
    See related
    EnsemblRapid:ENSRNOG00000026120 AllianceGenome:RGD:1307845
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    Rbm24
    Summary
    Predicted to be part of Hrd1p ubiquitin ligase complex. Orthologous to human FAM8A1 (family with sequence similarity 8 member A1). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Kidney (RPKM 258.4), Brain (RPKM 242.6) and 9 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Fam8a1 in Genome Data Viewer
    Location:
    17p14
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 17 NC_086035.1 (18232834..18241736, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 17 NC_051352.1 (18026601..18035509, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 17 NC_005116.4 (18413093..18421974, complement)

    Chromosome 17 - NC_086035.1Genomic Context describing neighboring genes Neighboring gene ribosomal protein L27, pseudogene 4 Neighboring gene nucleoporin 153 Neighboring gene uncharacterized LOC120097854 Neighboring gene cyclase associated actin cytoskeleton regulatory protein 2 Neighboring gene uncharacterized LOC134482694 Neighboring gene uncharacterized LOC120097855

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General gene information

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    part_of Hrd1p ubiquitin ligase complex  

    General protein information

    Preferred Names
    protein FAM8A1
    Names
    RNA binding motif protein 24

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001305175.1 → NP_001292104.1  protein FAM8A1

      See identical proteins and their annotated locations for NP_001292104.1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000017
      UniProtKB/TrEMBL
      A6J712, D4ACR7
      Related
      ENSRNOP00000057242.2, ENSRNOT00000060500.7
      Conserved Domains (1) summary
      pfam06271
      Location:215 → 374
      RDD; RDD family

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086035.1 Reference GRCr8

      Range
      18232834..18241736 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_008771560.4 → XP_008769782.1  protein FAM8A1 isoform X1

      See identical proteins and their annotated locations for XP_008769782.1

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