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    Zfp318 zinc finger protein 318 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 685082, updated on 9-Dec-2024

    Summary

    Official Symbol
    Zfp318provided by RGD
    Official Full Name
    zinc finger protein 318provided by RGD
    Primary source
    RGD:1583221
    See related
    EnsemblRapid:ENSRNOG00000018741 AllianceGenome:RGD:1583221
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to enable protein heterodimerization activity and protein homodimerization activity. Predicted to be involved in negative regulation of DNA-templated transcription and positive regulation of DNA-templated transcription. Predicted to be located in cytosol and nucleus. Predicted to be active in nucleoplasm. Orthologous to human ZNF318 (zinc finger protein 318). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Lung (RPKM 91.0), Spleen (RPKM 76.3) and 9 other tissues See more
    Orthologs
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    Genomic context

    See Zfp318 in Genome Data Viewer
    Location:
    9q12
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 9 NC_086027.1 (22060899..22100174, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 9 NC_051344.1 (14562958..14601557, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 9 NC_005108.4 (16947818..16979131, complement)

    Chromosome 9 - NC_086027.1Genomic Context describing neighboring genes Neighboring gene tau tubulin kinase 1 Neighboring gene solute carrier family 22 member 7 Neighboring gene cysteine-rich protein 3 Neighboring gene small nucleolar RNA, H/ACA box 38 Neighboring gene uncharacterized LOC120094785 Neighboring gene uncharacterized LOC134480556 Neighboring gene ATP binding cassette subfamily C member 10 Neighboring gene delta like non-canonical Notch ligand 2

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General gene information

    Gene Ontology Provided by RGD

    Function Evidence Code Pubs
    enables nucleic acid binding  
    enables protein heterodimerization activity  
    enables protein homodimerization activity  
    enables zinc ion binding  
    Component Evidence Code Pubs
    located_in cytosol  
    located_in cytosol  
    is_active_in nucleoplasm  
    located_in nucleoplasm  
    located_in nucleus  

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001427716.2 → NP_001414645.1  zinc finger protein 318

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000009
      UniProtKB/TrEMBL
      A6JIR2, M0RD44
      Related
      ENSRNOP00000067539.3, ENSRNOT00000073191.5

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086027.1 Reference GRCr8

      Range
      22060899..22100174 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_039084820.2 → XP_038940748.2  zinc finger protein 318 isoform X1

      UniProtKB/TrEMBL
      F1M0H0
      Related
      ENSRNOP00000025335.6, ENSRNOT00000025335.7

    RNA

    1. XR_005489449.2 RNA Sequence

    2. XR_005489448.2 RNA Sequence

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