Cntnap3 contactin associated protein family member 3 [Rattus norvegicus (Norway rat)] - Gene

Summary

Symbol: Cntnap3provided by RGD
Full Name: contactin associated protein family member 3provided by RGD
Primary source: RGD:1563615
See related: EnsemblRapid:ENSRNOG00000027309 AllianceGenome:RGD:1563615
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Rattus norvegicus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as: Cntnap3b; LRRGT00090; RGD1563615; AABR07026805.1
Summary: Predicted to be involved in cell adhesion. Predicted to be located in cell junction and membrane. Predicted to be active in axon and perikaryon. Orthologous to several human genes including CNTNAP3 (contactin associated protein family member 3). [provided by Alliance of Genome Resources, Dec 2024]
Expression: Biased expression in Brain (RPKM 23.0), Kidney (RPKM 2.6) and 1 other tissue See more
Orthologs: human mouse all
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Genomic context

Location:: 17p14

Exon count:: 24

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCr8 (GCF_036323735.1)	17	NC_086035.1 (273137..461233)
RS_2023_06	previous assembly	mRatBN7.2 (GCF_015227675.2)	17	NC_051352.1 (267379..455478)
106	previous assembly	Rnor_6.0 (GCF_000001895.5)	17	NC_005116.4 (2197355..2380727, complement)

Chromosome 17 - NC_086035.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
BioProject: PRJNA238328
Publication: PMID 24510058
Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Markers

D17Got115 (e-PCR)
- UniSTS:115733

D17Mgh6 (e-PCR)
- UniSTS:239654

Gene Ontology Provided by RGD

Process	Evidence Code	Pubs
involved_in cell adhesion	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
is_active_in axon	ISO Inferred from Sequence Orthology more info
located_in cell junction	IEA Inferred from Electronic Annotation more info
located_in membrane	IEA Inferred from Electronic Annotation more info
is_active_in perikaryon	ISO Inferred from Sequence Orthology more info

General protein information

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Preferred Names: contactin associated protein family member 3

Names: contactin associated protein 3; contactin associated protein like 3; contactin associated protein-like 3B

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001402217.1 → NP_001389146.1 contactin associated protein family member 3 precursor

Status: VALIDATED

Source sequence(s)

JAXUCZ010000017

UniProtKB/TrEMBL

D4AA49

Related

ENSRNOP00000040519.6, ENSRNOT00000046525.7