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    Vom1r90 vomeronasal 1 receptor 90 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 266771, updated on 9-Dec-2024

    Summary

    Official Symbol
    Vom1r90provided by RGD
    Official Full Name
    vomeronasal 1 receptor 90provided by RGD
    Primary source
    RGD:708509
    See related
    EnsemblRapid:ENSRNOG00000058136 AllianceGenome:RGD:708509
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    V1ra16
    Summary
    Predicted to enable pheromone receptor activity. Predicted to be involved in G protein-coupled receptor signaling pathway; response to pheromone; and sensory perception of chemical stimulus. Predicted to be located in plasma membrane. Orthologous to human VN1R17P (vomeronasal 1 receptor 17 pseudogene). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Heart (RPKM 4.3), Muscle (RPKM 4.0) and 9 other tissues See more
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    Genomic context

    See Vom1r90 in Genome Data Viewer
    Location:
    4q34
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 4 NC_086022.1 (123696273..123705276, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 4 NC_051339.1 (122139053..122148056, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 4 NC_005103.4 (121675261..121684264, complement)

    Chromosome 4 - NC_086022.1Genomic Context describing neighboring genes Neighboring gene thioredoxin reductase 3 Neighboring gene high mobility group protein B2-like Neighboring gene RNA polymerase II subunit M, pseudogene 3 Neighboring gene vomeronasal type-1 receptor 44-like Neighboring gene vomeronasal 1 receptor 97 like 1 Neighboring gene vomeronasal 1 receptor 92

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General gene information

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    located_in plasma membrane  

    General protein information

    Preferred Names
    vomeronasal type-1 receptor 90
    Names
    pheromone receptor VN6
    putative pheromone receptor VN6
    vomernasal 1 receptor Vom1r90
    vomeronasal 1 receptor, A16
    vomeronasal V1r-type receptor V1ra16
    vomeronasal receptor 6
    vomeronasal type-1 receptor A16

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_153729.3NP_714951.2  vomeronasal type-1 receptor 90

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000004
      UniProtKB/Swiss-Prot
      Q5J3F6, Q62855
      UniProtKB/TrEMBL
      A6IB67
      Related
      ENSRNOP00000071886.1, ENSRNOT00000083168.3
      Conserved Domains (1) summary
      cd13949
      Location:11305
      7tm_V1R_pheromone; vomeronasal organ pheromone receptor type-1 family, member of the seven-transmembrane G protein-coupled receptor superfamily

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086022.1 Reference GRCr8

      Range
      123696273..123705276 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
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