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    Slamf6 SLAM family member 6 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 498287, updated on 9-Dec-2024

    Summary

    Official Symbol
    Slamf6provided by RGD
    Official Full Name
    SLAM family member 6provided by RGD
    Primary source
    RGD:1561848
    See related
    EnsemblRapid:ENSRNOG00000038286 AllianceGenome:RGD:1561848
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1561848
    Summary
    Predicted to be involved in several processes, including T-helper 17 cell lineage commitment; natural killer cell activation; and positive regulation of cytokine production. Predicted to be located in plasma membrane. Predicted to be active in external side of plasma membrane. Orthologous to human SLAMF6 (SLAM family member 6). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Thymus (RPKM 187.2), Spleen (RPKM 102.4) and 1 other tissue See more
    Orthologs
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    Genomic context

    See Slamf6 in Genome Data Viewer
    Location:
    13q24
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 13 NC_086031.1 (86916956..86937697)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 13 NC_051348.1 (84384561..84405300)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 13 NC_005112.4 (90300160..90321781)

    Chromosome 13 - NC_086031.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103692288 Neighboring gene signaling lymphocytic activation molecule family member 1 Neighboring gene CD84 molecule Neighboring gene ribosomal protein S15, pseudogene 16 Neighboring gene VANGL planar cell polarity protein 2 Neighboring gene uncharacterized LOC134481533

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001191932.1NP_001178861.1  SLAM family member 6 precursor

      Status: PROVISIONAL

      Source sequence(s)
      JAXUCZ010000013
      UniProtKB/TrEMBL
      A6JG11, D4A6B3
      Related
      ENSRNOP00000035388.4, ENSRNOT00000029315.7
      Conserved Domains (1) summary
      cl11960
      Location:44144
      Ig; Immunoglobulin domain

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086031.1 Reference GRCr8

      Range
      86916956..86937697
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)