U.S. flag

An official website of the United States government

Links from GEO Profiles

    • Showing Current items.

    Tnmd tenomodulin [ Rattus norvegicus (Norway rat) ]

    Gene ID: 64104, updated on 9-Dec-2024

    Summary

    Official Symbol
    Tnmdprovided by RGD
    Official Full Name
    tenomodulinprovided by RGD
    Primary source
    RGD:620938
    See related
    EnsemblRapid:ENSRNOG00000060970 AllianceGenome:RGD:620938
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    ChM1L
    Summary
    Involved in cellular response to BMP stimulus and tendon cell differentiation. Predicted to be located in membrane and nuclear envelope. Orthologous to human TNMD (tenomodulin). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Muscle (RPKM 183.0), Spleen (RPKM 16.8) and 2 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Tnmd in Genome Data Viewer
    Location:
    Xq32
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) X NC_086039.1 (101350432..101365929)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) X NC_051356.1 (97057137..97072634)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) X NC_005120.4 (104684676..104700173)

    Chromosome X - NC_086039.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC134484183 Neighboring gene U6 spliceosomal RNA Neighboring gene tetraspanin 6 Neighboring gene sushi-repeat-containing protein, X-linked 2

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    General gene information

    Gene Ontology Provided by RGD

    Component Evidence Code Pubs
    located_in cell surface PubMed 
    located_in membrane  
    located_in nuclear envelope  

    General protein information

    Preferred Names
    tenomodulin
    Names
    chondromodulin-1-like protein
    chondromodulin-I-like protein
    myodulin
    rChM1L
    rTeM
    teM

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_022290.1NP_071626.1  tenomodulin

      See identical proteins and their annotated locations for NP_071626.1

      Status: PROVISIONAL

      Source sequence(s)
      AF191769
      UniProtKB/Swiss-Prot
      Q9ESC2
      UniProtKB/TrEMBL
      A0A8I5Y566, A6IVD7
      Related
      ENSRNOP00000073972.1, ENSRNOT00000083229.3
      Conserved Domains (1) summary
      smart01039
      Location:93186
      BRICHOS; The BRICHOS domain is found in a variety of proteins implicated in dementia, respiratory distress and cancer

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086039.1 Reference GRCr8

      Range
      101350432..101365929
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    External link. Please review our privacy policy.