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    Smim13 small integral membrane protein 13 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 690806, updated on 9-Dec-2024

    Summary

    Official Symbol
    Smim13provided by RGD
    Official Full Name
    small integral membrane protein 13provided by RGD
    Primary source
    RGD:1591023
    See related
    EnsemblRapid:ENSRNOG00000073728 AllianceGenome:RGD:1591023
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1566043
    Summary
    Predicted to be located in membrane. Orthologous to human SMIM13 (small integral membrane protein 13). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Testes (RPKM 231.0), Brain (RPKM 131.3) and 9 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Smim13 in Genome Data Viewer
    Location:
    17p12
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 17 NC_086035.1 (23703414..23721457, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 17 NC_051352.1 (23497662..23515705, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 17 NC_005116.4 (21334989..21353252, complement)

    Chromosome 17 - NC_086035.1Genomic Context describing neighboring genes Neighboring gene neural precursor cell expressed, developmentally down-regulated 9 Neighboring gene uncharacterized LOC134482836 Neighboring gene uncharacterized LOC102548345 Neighboring gene small integral membrane protein 13 like Neighboring gene microRNA 3566 Neighboring gene ELOVL fatty acid elongase 2

    Genomic regions, transcripts, and products

    General protein information

    Preferred Names
    small integral membrane protein 13
    Names
    UPF0766 protein C6orf228 homolog
    rCG44158

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001135576.3NP_001129048.1  small integral membrane protein 13

      See identical proteins and their annotated locations for NP_001129048.1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000017
      UniProtKB/Swiss-Prot
      D3ZR35
      Related
      ENSRNOP00000105436.1, ENSRNOT00000151274.1
      Conserved Domains (1) summary
      pfam15938
      Location:146
      DUF4750; Domain of unknown function (DUF4750)

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086035.1 Reference GRCr8

      Range
      23703414..23721457 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)